Dbip002407.1
Basic Information
- Insect
- Drosophila bipectinata
- Gene Symbol
- -
- Assembly
- GCA_018153845.1
- Location
- JAECYF010000001.1:12806502-12808145[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.7e-16 1.7e-12 46.6 0.0 2 45 360 403 359 403 0.95 2 3 0.048 97 2.6 0.0 28 37 433 442 432 447 0.90 3 3 1.2e-19 2.3e-16 59.0 0.0 2 43 469 510 468 511 0.94
Sequence Information
- Coding Sequence
- ATGAATCATCTAAAGTGGATGGGGCACTCGTCCACGATAATGGACATCCAGCGCTCACTGCGGAACGATTCCCAGAGCTGTGAAGTGGTGCTGGCCTCCAGGGATGGAGTTCGGGTGCGCGCCCATCTCTTCGTGCTGAGTACTTGCAGCGACCTGATGCGGAACATTCTAGTGGACGTGCTCCCGGGGCAGGAGGCTACCATCATGCTTCCTGATATAAGGGGCGAACTTCTCGAAAGCATGCTTTCCTTTATATACATGGGAGAGACCAGCCTGCCCTCCGCGTCGCTCTCGGAGTTTTTGGAAGCCATCAATCTTTTGGGAATCAAGTCTGCCATTAGTTTTGAGTGCAATCCTTCGATTTCAAATCACTCCGCGGACGTAAGCTCAGCTAGTACGATGGCTGTGGAGACTGCCAAATCCATATCTGGTCTGCAGATAGCCCAGGCAGAACTTCTGGAGGACGAGGAGGAGGTCCCAGCCCCCAGTACCGTTGCAGCCACTGTCATGGCTGACCCGCCCACTCACTCTGCACGTTCGCTGGAATACTTGGACGTATACGACCCCCCGAAGATCACCTACTCCATCGAGCATATGGATGGAAACACAAGTGGCAATCAGTATATTCTTACGGAAAATACGGGAACCTTTACCATTACACAGACCGCTTCTTCTCTGAGCAAGCTAACAGACCCAACGGAAGCAGCGGCTGGTGTTGCCGATGCGGAAATGGCGGAAGAAGATGTTGACGCAGATGGGGATGGGGACGCGGATCAGGACCCAGACGTAGACCTTGCTGAAGACTCCGAGGAACCCGATACCCAGATTCTAGAAGAAGAGTATGTGGCAACCAATCCGCCTTTCGAGATAGAAAACGCAGGAGACATGGACGACGATGATATGCCCGAGGAAATTGATGAGGAAATTCTGGAGGTAAAACCACGTAAGTTTGGTGGAGGAAAACCACGCGGCCGCCGTTCAATGGGTGCCAGGACGACAAGGAGGTCATTTGGTAAGCACCACCAGCACCAGCAAGAGGAATTCGTGAATCTGAAGCGCGATATAAAGGATGATATTAACGATGCCCTGGACATGGCAGCAGATGCAGTGATCCTCGAGGGATTGAGCCTGCAGAAGGCAGCCGATCGATTCGACATCTCCAAAACGGTGCTGTGGCGTCGTGTGCGCACTAATCCAGCTTATATGCGAAACAATCGGGAAAGGCCTTCACTTTCGGAGGCATATGAGCGCCTTAAGAACGGAGACTCTCTGAAGAGCATCAGCCAGGACCTGCGTATCCCCATGTCCACTCTGCACCGGCACAAGGTACGTCTGTCGGCCCAAGGCCGTCTGCCCGATTTCGTGGCCTGTCGCCGCAGGGACACCACGCCGAAGGACGAGCTACGCGACAAATTGGCCAAAGCAGTACATGCATGCCTGAACGAGGGCATGTCCCAGAATCATGCAGCGAATCTCTTTGAAATCCCGAAGAGCACACTTTGGCGTCACCTTCAGCGCCAGGAGGACCGGAAGGTTAAGAAGGAGCAGCAGGACGAGTACGAGGACGATCTGTTAAACTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRSLRNDSQSCEVVLASRDGVRVRAHLFVLSTCSDLMRNILVDVLPGQEATIMLPDIRGELLESMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSISNHSADVSSASTMAVETAKSISGLQIAQAELLEDEEEVPAPSTVAATVMADPPTHSARSLEYLDVYDPPKITYSIEHMDGNTSGNQYILTENTGTFTITQTASSLSKLTDPTEAAAGVADAEMAEEDVDADGDGDADQDPDVDLAEDSEEPDTQILEEEYVATNPPFEIENAGDMDDDDMPEEIDEEILEVKPRKFGGGKPRGRRSMGARTTRRSFGKHHQHQQEEFVNLKRDIKDDINDALDMAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLSAQGRLPDFVACRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRQEDRKVKKEQQDEYEDDLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615487;
- 90% Identity
- iTF_00475857;
- 80% Identity
- iTF_00488119;