Dsuz015373.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila suzukii
Gene Symbol
-
Assembly
GCA_013340165.1
Location
WWNF01000009.1:4183686-4186695[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.4e-05 0.00094 19.4 3.4 1 23 204 227 204 227 0.95
2 17 0.00049 0.033 14.5 0.2 1 23 234 256 234 256 0.97
3 17 0.2 13 6.3 0.1 2 23 288 309 287 309 0.94
4 17 6.2e-05 0.0042 17.3 1.7 1 23 399 422 399 422 0.97
5 17 0.23 16 6.1 0.6 1 19 429 447 429 450 0.93
6 17 0.064 4.3 7.8 6.4 1 23 459 481 459 481 0.95
7 17 6.5e-06 0.00044 20.4 0.4 1 23 488 511 488 511 0.97
8 17 0.00037 0.025 14.9 2.4 2 23 519 540 518 540 0.96
9 17 0.017 1.2 9.6 0.1 2 21 567 586 566 587 0.94
10 17 0.0076 0.52 10.8 2.6 1 23 636 659 636 659 0.98
11 17 0.082 5.5 7.5 0.5 1 23 696 719 696 719 0.93
12 17 0.00012 0.0081 16.4 1.6 2 23 752 774 751 774 0.95
13 17 0.0008 0.054 13.8 0.1 1 23 788 810 788 810 0.95
14 17 1.7e-05 0.0012 19.1 1.0 1 23 816 838 816 838 0.99
15 17 3.1e-07 2.1e-05 24.6 2.6 1 23 844 866 844 866 0.98
16 17 3.5e-05 0.0024 18.1 3.8 1 23 872 894 872 894 0.97
17 17 2.4e-05 0.0016 18.6 0.5 1 22 900 921 900 924 0.90

Sequence Information

Coding Sequence
ATGAAGCTGCCGGTGATTTGTCGCACCTGCGACTCCACGGACACCGACAACCTGCTGAAGCTGGCCACGCCCTCGAAAAAGTATCCGGACAAGCTGCTTTCGGAGATTCTCTGCGAGCTGACGGAAATCAATCTGGATGCCAGCGGAAGCCAGAAGCTGCCCCAGTGCTTGTGCAGCGGATGCACCAAGAAACTATTGGGTGCCTATTGCTATGTGAAGCAGGCGCTGGCCGCCAACGAATTGCTGATGAAGCACCTGAGGAACGGAGCTGCTCCTTCGACCACAGACTGCCTGCAGGAGGCACCCATGGAACTGTGTGCCGAGCAGCATGTGGAGGTCAAGCTGGAGACGGAGGACGAGGACTGCGGCGACAACGATGTCAGCATGACTTGCTCCGAGCTCCCGGAACCGGACGAAATGGACGTGGAGAGCAAGAAGTCTGTGGATCCTCTGACAATGATTGAGACGGTGAAGCTTGAAGCGGAACCAAGAAGCGTGCAAAAACCTTTGGAAGACGATCTAGCATCGGACTTTGAAGACGACGACTCTCTGGATAACCTGCCGTTGGATAAGCGCATTCAACAGTGGAAGACAGGAAGGAAGTCTGTTTTTAAATGCCAGGACTGCCATAGAAGCTTTAAACGAGCCGAGTTCCTAAAACGCCACGAAATCCGCGTACACAAGCAGGATACCCGCTTGTTCGCCTGCTCACTCTGCATTCGGAAGTTCAGCCGCAGCGAAGCCCTCGAAGCGCACTTGAAAGTCCATCGGATCTCCAAGCGATCGGCCAACTTAAGCGAACACAAGAAGGCCAAGGAGGTGGATCTGAATCTCTGCAAGCCGCATGGCTATAAGCTTATTGAGTGCATGATCTGCCAGAGCCAGTACAACAAGATTGCCGATCTGCGGCGGCACTTGGAGGAACACCCCGAGATAGTCAGCCTAGGCGGTCGGCCAAATGTGGAGCCGCACGAGATGGCGGAGCTGTTTTATCCCGACTCCAAGGATCTCGGTGAGGAGCAGTTGATCGGTTTGATTCGCAAGGATTTGGCGGCAGGCATCTATCAGCGTTTCTATTCGATAACCAACCAAAGTGGTTACGAAATGGACCTGGACAGCTCGGAGACGGATAGCGATCTGGACGGAGATCCCGAGGATCAGCAAAAAAGGGGAAAGAAGGCGCGCAAGGCCAGCTACAGCTGCGAACTATGCCAGCAGAAGTTCCCGCGGAAATATCAGCTATATGACCACCAGCGGGAGAACCACAGTTGGTCAGAGGCTCCTCATGTCTGCGGCCGGTGTGATGGACGCTTTGTGAGcctgcagctgctgcggcACCACAACGAGTCGCAGTGCCGCAATGCGCAGAAACGTTTTCTCTGTCACAAATGCCCGCTTCGCTTCCGATGGAAACACAACCTGAAAACACACTTCCGCGAGCACAGGATTACAAATCAGACCTTTGAGTGCCCCGAGTGCAAACGGGTCTTTGACAAAAAGAAATCCCTCACAGTTCACCTGCTCAGCGTACATGCAGAGGAATCAAAGCTGATCCCCTGCCAGTGGTGCAGTCGCAAGTTCTACCGACACGACTACTTGGTGAAGCACCTGAAGCGGCACGGACTCAAGGAACAGGACATTCCACTGGCCGAAACCTTGATTGCGGCGACGTCGCGGCCGAATGGAGCAAAGCGCATCACCTGCCGCATGTGCAACCTGCATTTTGAGCGTATTGTGGACCTGAGAGCCCACATTCAGCTGGAGCTAAAGCTTTCTTTGTCCCTGCACCAGAGCTACGACTCCCTACATAATTACTCGATAACAAATGAGTCCGGTTTTGAGCTACAGCTGGAGGATTCGGAGACCGAGGACGAGATACAGCCTAGTGGTGTCAGTCGTCCCGTTTACATCTGCGAGCTGTGCAGTGTGCAATGCAAGCGGAAATTTGAGATGATCCAGCATCAGCGGACGATGCATCGTTTCGACAAAATGCCACACGAGTGCGATGACTGCATTTTCAAGTGTGTGTCCAAGAGCATTATGGATCACCACCGGCAGGGCCAGTGTAGCAGTACAGAAAAGAAGCATCCTTGCGACAAGTGCTCCTACAAGTTCATGTGGCCCGAGAACCTGGAACAGCACGTTCTTCTGCAGCACAGCCAATCCTCCGCCAGCAATCCGACAGGAGCTAAGCGAACGTCTGGTGCCGGTGACCTGGACAAGGACGCCGCCGAGGACGGGGTGCCGCTGCTGCAGTGTCCGCACTGCGATCGCACCTACCAGATGAAGTCGCGTCTGAACAACCACATCCGCGATGTGCACGTTAACGGCGACCGAAAGCGAAAGGAGGCGGTCAAACGCTTCCTTTGCTCCCTATGCGGCAGGGAGACAGGATCCGCCGCGGCTCTGGTGACCCATATGCGTCGGCACACTGGCGAGAAGCCCTTCAAGTGCGACCTTTGCGAGATGGCCTTCCCACGGCACTCTGAGCTGGCCTCGCATCGCCGAATGCACACCGGCGAGAAGCCGTTCCATTGCACCGTGTGCGGCAAGGACTTCGCCCGCTCCGACAAGCTCAAGCGCCACATGCTCACCCACAGCGGCCTGAAGCCGCACAAGTGTACCTACTGCGAGAAGAGCTACCGCCAGGCCAAGGACCTGAAGCTCCACCTGCAGCAGCACACCGGGGAGTGTCCCTTCGTGTGCGGCACCTGCGGCGAACGCTTCATCCAGAGCAGCACGCTGGAGAAGCACCGGCTGATGCGACGCCACTTCGTCTAG
Protein Sequence
MKLPVICRTCDSTDTDNLLKLATPSKKYPDKLLSEILCELTEINLDASGSQKLPQCLCSGCTKKLLGAYCYVKQALAANELLMKHLRNGAAPSTTDCLQEAPMELCAEQHVEVKLETEDEDCGDNDVSMTCSELPEPDEMDVESKKSVDPLTMIETVKLEAEPRSVQKPLEDDLASDFEDDDSLDNLPLDKRIQQWKTGRKSVFKCQDCHRSFKRAEFLKRHEIRVHKQDTRLFACSLCIRKFSRSEALEAHLKVHRISKRSANLSEHKKAKEVDLNLCKPHGYKLIECMICQSQYNKIADLRRHLEEHPEIVSLGGRPNVEPHEMAELFYPDSKDLGEEQLIGLIRKDLAAGIYQRFYSITNQSGYEMDLDSSETDSDLDGDPEDQQKRGKKARKASYSCELCQQKFPRKYQLYDHQRENHSWSEAPHVCGRCDGRFVSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKHNLKTHFREHRITNQTFECPECKRVFDKKKSLTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEQDIPLAETLIAATSRPNGAKRITCRMCNLHFERIVDLRAHIQLELKLSLSLHQSYDSLHNYSITNESGFELQLEDSETEDEIQPSGVSRPVYICELCSVQCKRKFEMIQHQRTMHRFDKMPHECDDCIFKCVSKSIMDHHRQGQCSSTEKKHPCDKCSYKFMWPENLEQHVLLQHSQSSASNPTGAKRTSGAGDLDKDAAEDGVPLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKEAVKRFLCSLCGRETGSAAALVTHMRRHTGEKPFKCDLCEMAFPRHSELASHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFVCGTCGERFIQSSTLEKHRLMRRHFV