Dneo011512.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- -
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000001.1:12712004-12713643[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.8e-14 1e-10 41.2 0.0 3 45 358 400 356 400 0.97 2 3 0.021 45 3.9 0.0 27 37 429 439 428 444 0.89 3 3 1.4e-18 3e-15 55.7 0.0 2 42 466 506 465 509 0.93
Sequence Information
- Coding Sequence
- ATGAACAATCTAAAATGGATGGGGCACTCGGCCACAATAATGGACATTCAGCGCTCGCTACAAAACGACGACGAATCGTGTGAAGTTATCCTGGCAGCCAAAGATGGGGCGAGTGTCCGCGCACACCTCTTCGTTCTCAGCACATGTAGCGATCTGATGCGAAATCTTTTGGTGGATTTACCACCAGGTCAGGAGGCAACCATTATTTTGCCCGATATTCGCGGTGATCTGTTAGAGAGTATGCTTTCGTTTATATACGTGGGTGAGACAAGCTTGCCCTCGGCCTCGCTGACTGAATTTGTAGAGGCTATAAATCTACTGGGTATTAAGTCGGCTATAAGTTTTGAGTGCAGTCCCACTTCTCTTAGCAGTTCAAATGTAGACACTGTAACCGAAGGCACCTTAGCTGTGGAGGCGGCCAAATCAATCGGCGACTTGCAAATAGAACATGCTGAATTGTTGGATGAGGATGATGACGGTGCGTCACAAGGACATGGTTCTGGCGATGCTGGAGGTAACCCACTTCTGGCCGATCCTCAAGAACAGCACCAACCTGCTCAGAGTAACCGTTCCCTCGAGTACCTTGATGTTTACAGCGATCAGCCGAAGATTACCTATTCAATTGAGCATATGAGCGGCACTTCCAGCGGAAATCAGTACATTCTAACAGAGAACACGGGCACTTTCACAATTTCCCAATCAGCTACATCCATATCTAAACTAGATGCATCCAATGTAGAAATAGCCGATGATGATGTCGAAGCAGATTGTAAAGACGAAGTCGAGGAACAAGAAACACACATGATTGAAGAGGAATATGTGGCAGCGGATCCCTTAATTGGTTTGACTATTGGCACAGAAGCGGAAATGGGCGATGCTGATGGCGTCGACGATGGTGAAGGCGACGAAGACGAAGGCGATGTAGATGATGTTATGGAAATTCAAGTAAAATCAAATCCCACCAAAACAAAAGGCCGTCGTGGTGGTAGTGCTCCGAAGGTAAAACGAGCTGTAGTCAAGCAACAACAGAAATACAGTGCCCTCAAAAACGAGACTAAAGATGGTATAACCGACGCTCTGGAATTGGCAGCAGATGCAGTACTTCGCCTCCACCTTAGTCTACAGAAGGCAGCTGATCGTTATGACATATCAAAAACAGTTTTATGGCGTCGTGTGCGCCATAGTCCCGAATACATGCGCAGCAATCGGGAAAAGCCCTCGTTATCAGAAGCGTACGAACGTCTTAAAAACGGTGATTCGCTGAAGAGTATTAGCCATGATTTAAATATACCTATGTCGACGCTCCATCGTCACAAAGTGAGACTAGCGGCTCAGGGGCGTTTGCCTGACTTTGTTGCCTGCCGTCGTCGTGATACCACACCCAAAGACGAGCTACGCGACAAGCTTCAGAAAGCCCTACACGCTTGCACCCACGAAGGTATGTCTCAGAATCATGCGGCGAATCTTTTCGAAATACCCAAGAGCACACTTTGGCGTCACCTGCAACGACACACAGCTGAAAAAGAGCGTAAAGTGAAATTGGAGCAACAGGATGATGAAGATGACGATCTTCTTACCTAG
- Protein Sequence
- MNNLKWMGHSATIMDIQRSLQNDDESCEVILAAKDGASVRAHLFVLSTCSDLMRNLLVDLPPGQEATIILPDIRGDLLESMLSFIYVGETSLPSASLTEFVEAINLLGIKSAISFECSPTSLSSSNVDTVTEGTLAVEAAKSIGDLQIEHAELLDEDDDGASQGHGSGDAGGNPLLADPQEQHQPAQSNRSLEYLDVYSDQPKITYSIEHMSGTSSGNQYILTENTGTFTISQSATSISKLDASNVEIADDDVEADCKDEVEEQETHMIEEEYVAADPLIGLTIGTEAEMGDADGVDDGEGDEDEGDVDDVMEIQVKSNPTKTKGRRGGSAPKVKRAVVKQQQKYSALKNETKDGITDALELAADAVLRLHLSLQKAADRYDISKTVLWRRVRHSPEYMRSNREKPSLSEAYERLKNGDSLKSISHDLNIPMSTLHRHKVRLAAQGRLPDFVACRRRDTTPKDELRDKLQKALHACTHEGMSQNHAANLFEIPKSTLWRHLQRHTAEKERKVKLEQQDDEDDDLLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555954; iTF_00577699; iTF_00500963; iTF_00577892; iTF_00591076; iTF_00501157; iTF_00590888; iTF_00483606; iTF_00483802; iTF_00571272; iTF_00503375; iTF_00571057; iTF_00503187; iTF_00604007; iTF_00604206; iTF_00555001; iTF_00555193; iTF_00612186; iTF_00611990; iTF_00618522; iTF_00618317; iTF_00523613; iTF_00523803; iTF_00600426; iTF_00600232;
- 90% Identity
- iTF_00577699;
- 80% Identity
- iTF_00555954;