Dtro005320.1
Basic Information
- Insect
- Drosophila tropicalis
- Gene Symbol
- -
- Assembly
- GCA_018151085.1
- Location
- JAECWH010000426.1:2153037-2154685[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-14 2e-11 43.5 0.0 3 45 358 400 356 400 0.94 2 3 0.027 49 3.8 0.0 28 38 430 440 428 444 0.88 3 3 9.6e-19 1.8e-15 56.4 0.0 2 42 466 506 465 509 0.93
Sequence Information
- Coding Sequence
- ATGAATAATCTTAAATGGATGGGCCATTCGGCCACAATAATGGATATTCAGCGCTCTCTACAAAGCGACGACGAATCGTGTGAAGTTATCCTGGCAGCCAAAGATGGCGCGAGTGTGCGTGCCCACCTCTTTATCCTCAGTACATGCAGCGATCTGATGCGGAATCTATTAATGGACTTACCACCAGGCCAGGAGACCACAATCATTCTGCCTGACATTCGTGGCGACCTGCTAGAGAGTATGCTATCATTTATCTACGTTGGTGAGACAAGTCTGCCCTCGGCGTCGTTAACTGAATTCGTAGAGGCAATAAATCTATTGGGTATCAAATCGGCCATTAGTTTTGAGTGTAATCCCACATCCCTGAACAGTACAAATGTAGACACCGTTGCTGAGGGCTCCATGGCTGTTCAGACGGCAAAATCAATTGGCGACTTGCAAATCGAGCATGCAGAATTACTAGATGAGGAGGATGAATCTGGGCACCAACAACATGGCTCTGGCGGCACTGGTGGAAACACGCTTCTCGCCGATGCTCAAGGTCACCAACAACAACCTGCTCAGAGTAGCCGGTCACTCGAATATCTCGATGTTTACGGCGATCAGCCGAAGATTACCTATTCCATTGAGCACATGAGCGGCACTTCCAGCGGCAATCAATATATTCTAACAGAAAACACGGGCACTTTCACCATATCCCAATCAGCTGTATCCATTTCGAAATTGGATCCATCCAATGTTCATTTGGCCGATGATGATGCGGAAAATGATTGCAAAGATGAAGTCGAGGAACAGGATAGCCAATTAATTGAAGAGGAATATGCCCCATCTGACCCGCTAATAGGCCTCGCTATTGGAACCGATGCGGAAATGGGCGAAGCTGATGGTGATGATGATGACGAAGGCGAAGATGAAGTTGGCGATGTTGAAGATGTAATGGAAATGGATGCCAAGCCGCAATTGACCAAATCAAAATCTCGTCGTGTTACTGCTCCGAAGATAAAACGACCCACAGCCAAGCCACCAATTAAATACACTGCCCTTAAGAACGAGAGTAAAGATGGTATTACCGATGCTCTTGAACTTGCCGCTGATGCTGTACTCCGTCTCGGACTTAGTTTACAGAAAGCAGCCGATCGTTATGACATATCGAAGACTGTTCTCTGGCGTCGCGTTCGCCATAGTCCCGAATATATGCGCAGTAATCGTGAGAAGCCATCATTATCAGAGGCATACGAACGTCTCAAGAACGGCGACTCGCTGAAGAATATTAGCCACGATCTAAGCATTCCGATGTCGACTTTACACCGTCATAAGATGCGACTAGCAGCCCAGGGTCGCCTGCCTGACTTTGTGGCCTGTCGTCGCCGTGATACCACACCCAAAGATGAGCTACGCGACAAACTGGCCAAGGCCCTACATGCTTGTACCCATGAAGGTATGTCACAGAATCATGCGGCGAATCTGTTTGAGATACCCAAAAGCACGCTTTGGCGGCACCTGCAACGACATACTGCTGAAAAGGAGCGTAAAGTTAAAATGGAGCGGAACGATGATGATGATGATGAAGATCTTCTTACCTAA
- Protein Sequence
- MNNLKWMGHSATIMDIQRSLQSDDESCEVILAAKDGASVRAHLFILSTCSDLMRNLLMDLPPGQETTIILPDIRGDLLESMLSFIYVGETSLPSASLTEFVEAINLLGIKSAISFECNPTSLNSTNVDTVAEGSMAVQTAKSIGDLQIEHAELLDEEDESGHQQHGSGGTGGNTLLADAQGHQQQPAQSSRSLEYLDVYGDQPKITYSIEHMSGTSSGNQYILTENTGTFTISQSAVSISKLDPSNVHLADDDAENDCKDEVEEQDSQLIEEEYAPSDPLIGLAIGTDAEMGEADGDDDDEGEDEVGDVEDVMEMDAKPQLTKSKSRRVTAPKIKRPTAKPPIKYTALKNESKDGITDALELAADAVLRLGLSLQKAADRYDISKTVLWRRVRHSPEYMRSNREKPSLSEAYERLKNGDSLKNISHDLSIPMSTLHRHKMRLAAQGRLPDFVACRRRDTTPKDELRDKLAKALHACTHEGMSQNHAANLFEIPKSTLWRHLQRHTAEKERKVKMERNDDDDDEDLLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555765;
- 90% Identity
- iTF_00618522;
- 80% Identity
- iTF_00612186;