Dema004738.1
Basic Information
- Insect
- Drosophila emarginata
- Gene Symbol
- -
- Assembly
- GCA_037075365.1
- Location
- JBAMCD010000120.1:924264-925823[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-13 3.6e-10 39.8 0.0 3 45 351 393 349 393 0.97 2 3 0.028 55 4.0 0.0 27 37 422 432 421 437 0.89 3 3 1.1e-18 2.2e-15 56.4 0.0 2 42 459 499 458 502 0.93
Sequence Information
- Coding Sequence
- ATGGGGCATTCGGCCACAATAATGGACATTCAGCGCTCGCTACAAAACGACGACGAATCGTGTGAAGTTATCCTGGCAGCCAAAGATGGGGCGAGTGTGCGCGCACATCTCTTCGTTCTCAGCACATGCAGCGATCTGATGAGAAATCTTTTGGTGGATTTACCACCAGGTCAAGAGGCAACCATTATTCTACCCGATATTCGTGGCGATCTTTTAGAGAGTATGCTCTCATTTATCTATGTGGGTGAGACAAGTCTGCCCTCGGCCTCGCTGACTGAATTTGTAGAGGCAATAAATCTACTGGGCATCAAGTCGGCTATAAGTTTTGAGTGCAATCCTACTTCTCTTAGCAGTTCAAATGTGGACACTGTTGCCGAAGGCACTTTGGCTGTTGAGGCAGCCAAATCAATCGGCGACCTGCAAATAGAACACGCGGAATTGttagatgaagatgatgacgGTGGATCACAAGGACATGGTTCTGGCGATGCTGGGGGAAACCCACTCTTAGGGGATCcgcaagaacagcaacaacctgCTCAGACTGGTCGTTCCCTAGAGTACCTCGATGTTTATAGTGATCAGCCGAAGATTACCTATTCAATTGAACATATGAGCGGCACATCCAGCGGGAATCAGTATATTCTAACAGAGAACACGGGCACTTTCACAATTTCTCAATCAGCTACATctatttctaaattaaatgcatCCAATGTAGAAATAGCCGATGATGATGTGGAAGCAGATTGCAAAGACGAAGTCGAGGAACAGGAATCACACATGATTGAAGAGGAATATGTGGCAGCGGATCCCTTAATTGGTTTAACCATTGGCACAGCGGCGGAAATGGGTGTAGCTGATGCCGAAGATGATGGTGAAGGCGACGAAGAAGATGGTGATGTGGATGATGTATTGGAAATGCAAGTAAAATCGAATCCCACCAAATCAAAAAGCCGTCGCGTTGGTACTCAAAAAGTAAAACGACCGGGCGCCAAGCAGCAACAGAAATACAGTGCCCTGAAGAACGATACTAAAGATGGTATAACCGACGCTCTAGAATTGGCCGCTGATGCAGTACTTCGTCTCCGCCTGAGCCTACAGAAGGCAGCTGATCGTTTTGACATATCAAAAACAGTTTTATGGCGTCGCGTGCGACATAGTCCCGAATACATGCGCAGCAATCGTGAGAAGCCCTCATTATCAGAGGCCTACGAACGCCTTAAAAACGGTGATTCGCTAAAGAGTATAAGCCATGATTTAAATATACCTATGTCAACCCTCCACCGTCACAAGGTAAGACTGGCGGCCCAGGGGCGTTTGCCTGACTTTGTTGCCTGCCGTCGTCGTGATACCACACCCAAAGACGAGCTACGCGACAAGCTTGCGAAGGCCCTGCACGCTTGCACCCACGAAGGTATGTCTCAGAATCATGCGGCGAATCTTTTCGAGATACCCAAGAGTACGCTATGGCGGCACCTGCAACGCCACACAGCCGAAAAGGAGCGTAAAGTAAAACTGGAGCAACaggatgaagatgatgacgaTCTTCTCACCTAA
- Protein Sequence
- MGHSATIMDIQRSLQNDDESCEVILAAKDGASVRAHLFVLSTCSDLMRNLLVDLPPGQEATIILPDIRGDLLESMLSFIYVGETSLPSASLTEFVEAINLLGIKSAISFECNPTSLSSSNVDTVAEGTLAVEAAKSIGDLQIEHAELLDEDDDGGSQGHGSGDAGGNPLLGDPQEQQQPAQTGRSLEYLDVYSDQPKITYSIEHMSGTSSGNQYILTENTGTFTISQSATSISKLNASNVEIADDDVEADCKDEVEEQESHMIEEEYVAADPLIGLTIGTAAEMGVADAEDDGEGDEEDGDVDDVLEMQVKSNPTKSKSRRVGTQKVKRPGAKQQQKYSALKNDTKDGITDALELAADAVLRLRLSLQKAADRFDISKTVLWRRVRHSPEYMRSNREKPSLSEAYERLKNGDSLKSISHDLNIPMSTLHRHKVRLAAQGRLPDFVACRRRDTTPKDELRDKLAKALHACTHEGMSQNHAANLFEIPKSTLWRHLQRHTAEKERKVKLEQQDEDDDDLLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555765;
- 90% Identity
- iTF_00577699;
- 80% Identity
- iTF_00501157;