Basic Information

Insect: Drosophila equinoxialis
Gene Symbol: -
Assembly: GCA_018150345.1
Location: JAECWI010000868.1:9814734-9816389[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.3e-14 5.6e-11 42.1 0.0 3 45 360 402 358 402 0.94

2 3 0.021 51 3.8 0.0 28 38 432 442 430 446 0.88

3 3 7.7e-19 1.8e-15 56.4 0.0 2 42 468 508 467 511 0.93

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.3e-14	5.6e-11	42.1	3	45	360	402	358	402	0.94
2	3	0.021	51	3.8	28	38	432	442	430	446	0.88
3	3	7.7e-19	1.8e-15	56.4	2	42	468	508	467	511	0.93

Sequence Information

Coding Sequence: ATGAATAATCTAAAATGGATGGGCCATTCGGCCACAATAATGGACATTCAGCGCTCTCTACAAAACGACGACGAATCGTGTGAAGTTATCCTGGCAGCCAAAGATGGCGCGAGTGTGCGCGCCCATCTCTTCATTCTCAGTACATGCAGCGATCTGATGCGGAATCTATTGATGGACTTACCACCTGGCCAAGAGACAACTATCATTCTGCCCGACATTCGTGGCGACCTGCTAGAGAGTATGCTATCATTTATCTACGTTGGTGAGACAAGTCTGCCCTCGGCGTCGTTGACTGAATTCGTAGAGGCAATAAATTTATTGGGCATTAAATCGGCCATTAGTTTTGAGTGTAATCCCACATCGCTGAACAGTACAAATGTGGACACTGTTGCCGAAGGCACCATGGCAGTTCAGACGGCAAAATCAATTGGCGACTTGCAAATCGAGCATGCCGAATTACTCGATGAGGAGGATGAATCTGGGCACCACGAACATGGCTCTGGCGGCACTGGTGCAACCACGCTTCTCGCCAATGCTCAAGATCAACAGCAACAACCTGCTCAGAGTAGCCGGTCACTCGAATATCTCGATGTTTACGGCGATCAGCCAAAGATTACCTATTCCATTGAGCACATGAGCGGCACTTCCAGCGGCAATCAATATATTCTAACAGAAAACACGGGCACTTTCACCATATCCCAATCAGCTGTGTCCATTTCGAAATTGGAAGCGTCCAATGTTGATATGGCCGATGATGATGCGGAAACCGATTGCAAAGATGAAGTTGAGGAGCAGGATACGCAATTAATTGAAGAGGAATATGCCCCATCTGATCCGTTAATAGGACTCGCTTTGAGAACCGATGCGGAAATGGGCGAAGCTGATGGTGAGGATGATGACGAAGGCGAAGATGATGATGGCGATGGCGATGTTGAAGATGTAATGGAAATGGAAGTGAAGCCGCAACCGACCAAATCAAAATCTCGTCGTGTTTCTGCACCGAAAGCAAAACGACCCACAGCCAAGCCACAAATTAAATACACTGCCCTTAAGAACGATAATAAAGATGGTATCACTGACGCTCTTGAACTCGCCGCTGATGCTGTACTCCGTCTCGGACTTAGTTTACAGAAAGCCGCCGATCGTTTTGACATATCGAAGACCGTTCTATGGCGCCGCGTTCGCCATAGTCCCGAATATATGCGCAGTAATCGTGAGAAGCCCTCATTGGCAGAGGCATACGAACGTCTCAAGAACGGCGACTCGCTGAAGAACATTAGCCATGATCTAAGCATACCGATGTCGACATTACACCGTCATAAGATGCGACTGGCAGCCCAGGGTCGTTTGCCTGACTTTGTGGCCTGTCGTCGTCGTGATACCACACCCAAAGATGAGCTACGCGACAAGCTGGCCAAGGCCCTACATGCCTGTACCCATGAGGGTATGTCCCAGAATCATGCGGCGAATCTATTCGAGATACCCAAAAGCACGCTTTGGCGGCACCTGCAACGACATACAGCTGAAAAGGAGCGCAAAGTTAAAATGGAGCAGAACGATGATGATGATGATGAAGATCTTCTAACCTAG
Protein Sequence: MNNLKWMGHSATIMDIQRSLQNDDESCEVILAAKDGASVRAHLFILSTCSDLMRNLLMDLPPGQETTIILPDIRGDLLESMLSFIYVGETSLPSASLTEFVEAINLLGIKSAISFECNPTSLNSTNVDTVAEGTMAVQTAKSIGDLQIEHAELLDEEDESGHHEHGSGGTGATTLLANAQDQQQQPAQSSRSLEYLDVYGDQPKITYSIEHMSGTSSGNQYILTENTGTFTISQSAVSISKLEASNVDMADDDAETDCKDEVEEQDTQLIEEEYAPSDPLIGLALRTDAEMGEADGEDDDEGEDDDGDGDVEDVMEMEVKPQPTKSKSRRVSAPKAKRPTAKPQIKYTALKNDNKDGITDALELAADAVLRLGLSLQKAADRFDISKTVLWRRVRHSPEYMRSNREKPSLAEAYERLKNGDSLKNISHDLSIPMSTLHRHKMRLAAQGRLPDFVACRRRDTTPKDELRDKLAKALHACTHEGMSQNHAANLFEIPKSTLWRHLQRHTAEKERKVKMEQNDDDDDEDLLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00555765;
90% Identity: iTF_00618522;
80% Identity: iTF_00503375;