Dsuc008788.1
Basic Information
- Insect
- Drosophila sucinea
- Gene Symbol
- -
- Assembly
- GCA_018150745.1
- Location
- JAECWP010000127.1:1857980-1859622[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.6e-14 1e-10 41.1 0.0 3 45 357 399 355 399 0.97 2 3 0.026 59 3.5 0.0 28 37 429 438 427 443 0.88 3 3 7.6e-19 1.7e-15 56.4 0.0 2 42 465 505 464 508 0.93
Sequence Information
- Coding Sequence
- ATGAATAATCTAAAATGGATGGGCCATTCGGCCACTATTATGGACATTCAGCGCTCTCTACAAAACGACGACGACTCGTGTGAAGTTATCCTGGCAGCCAAAGATGGAGCCAGTGTGCGCGCCCATCTCTTCGTCCTCAGCACATGCAGTGATCTGATGCGAAATCTGTTGGTAGACTTACCTCCGGGCCAAGAGGCAACCATTATTCTACCCGACATTCGTGGCGATCTGCTAGAGAGTATGCTCTCCTTTATCTACGTTGGCGAGACAAGCCTGCCCTCGGCCTCGCTGACTGAATTCGTGGAGGCCATTAATCTACTAGGCATAAAGTCGGCCATCAGTTTTGAGTGCAATCCCACATCGCTAAACAGTTCAAATGTCGACACGGTTGCTGAAGGCACCATGGCTGTGCAGACGGCCAAATCAATTGGTGAATTGCAAATCGAGCATGCTGAATTGTTAGATGAAGAGGATGAGTCTGGGCAGCAAGAGCAAGGATCTGGTGATAATGGGGCAAACGCGCTTCTCGGCGATCCTCAGGAACAGCAACAACCTACTCAGAGTAACCGTTCCCTCGAGTATCTCGATGTTTACGGGGATCAGCCGAAAATTACCTATTCCATTGAGCACATGAGTGGCACTTCCAGCGGTAACCAATACATTTTAACAGAAAACACGGGCACTTTTACCATATCACAATCAGCTACATCCATTTCAAAATTGGACACATCCCATGTAGATATGGCCGATGACGATGTGGAAACTGATTGCAAAGATGAAGTCGAGGAACAGGAAACCCAACTGATTGAAGAGGAATATGTTGCATCCGATCCTTTGATCGGCTTAGCAATGGGCACAGATGCGGAAATGGGCGAAGCTGATGGCGAGGATGATGTTGAAGGTGATGAAGACGATGGCGATGTTGAAGATATAATGGAAATGGAAGTGAAGCCGAATCCGACCAAATCAAAAACCCGTCGCGTGACTGCCCCGAAGGCAAAACGACCCGCCGCCAAACAACAAATAAAATATACTGCCCTTAAGAACGAGAGTCGAGATGGCATCACTGATGCCCTTGAACTGGCCGCTGATGCCGTACTCCGTCTCCGGCTTAGTCTACAGAAGGCTGCTGATCGTTATGACATATCGAAAACAGTTCTATGGCGTCGCGTTCGCCATAGTCCGGAGTATATGCGCAGTAATCGTGAGAAGCCCTCATTATCGGAGGCGTACGAACGCCTTAAGAATGGAGACTCGCTGAAGAATATTAGCCATGATTTAAGTATTCCGATGTCGACGCTACACCGTCACAAGGTACGATTAGCAGCCCAGGGCCGCTTGCCTGACTTTGTGGCCTGCCGCCGTCGTGATACCACTCCCAAAGATGAGCTGCGCGACAAACTGGCAAAAGCACTGCACGCTTGCACCCACGAGGGCATGTCACAGAATCATGCGGCAAATTTATTTGAAATACCCAAGAGCACGCTCTGGCGTCACCTGCAACGACATACAGCTGAAAAGGAACGCAAAGTTAAAATGGAGCAGCACGATGATGACGACGAGGACCTTCTTACCTAA
- Protein Sequence
- MNNLKWMGHSATIMDIQRSLQNDDDSCEVILAAKDGASVRAHLFVLSTCSDLMRNLLVDLPPGQEATIILPDIRGDLLESMLSFIYVGETSLPSASLTEFVEAINLLGIKSAISFECNPTSLNSSNVDTVAEGTMAVQTAKSIGELQIEHAELLDEEDESGQQEQGSGDNGANALLGDPQEQQQPTQSNRSLEYLDVYGDQPKITYSIEHMSGTSSGNQYILTENTGTFTISQSATSISKLDTSHVDMADDDVETDCKDEVEEQETQLIEEEYVASDPLIGLAMGTDAEMGEADGEDDVEGDEDDGDVEDIMEMEVKPNPTKSKTRRVTAPKAKRPAAKQQIKYTALKNESRDGITDALELAADAVLRLRLSLQKAADRYDISKTVLWRRVRHSPEYMRSNREKPSLSEAYERLKNGDSLKNISHDLSIPMSTLHRHKVRLAAQGRLPDFVACRRRDTTPKDELRDKLAKALHACTHEGMSQNHAANLFEIPKSTLWRHLQRHTAEKERKVKMEQHDDDDEDLLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555765;
- 90% Identity
- iTF_00618522;
- 80% Identity
- iTF_00604206; iTF_00555001; iTF_00555193;