Cpar005435.1
Basic Information
- Insect
- Cephus parvus
- Gene Symbol
- -
- Assembly
- GCA_030142435.1
- Location
- JARQTA010000456.1:1415848-1418248[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.5e-13 8.6e-10 38.5 0.0 1 39 141 180 141 184 0.90 2 4 2.3e-12 2.7e-09 36.9 0.1 2 39 196 233 195 236 0.94 3 4 8.3e-19 9.5e-16 57.6 0.0 2 45 251 295 250 295 0.97 4 4 9.6e-19 1.1e-15 57.4 0.1 1 42 302 344 302 345 0.97
Sequence Information
- Coding Sequence
- ATGTTTTGTCACACAGGGTTAGGTCACTACGGTCATCATCCGGACCCGGGAGAGGTCGATCTGCCCCCTGAGACTCAGCCCACACCCCCCAGCGCTACTTTAGTTGGCACCACGATCACCCACCTGAGAGATCCCGATCATCACTCGACAGATATCCAGAATTGCGACAGTGTCAAGATCAAGTTCGAGACTTTGCACACGATGGATTCCTCGGATACGATCGATATCGATAGCCACATGTCGGACAGGGCGAGTGTGAGTTCGAAGAACGCTGTGGATAACGATAATATGATGATGATCACGCCAGAATTATTGGGCCTCATGCCGTCGGGAAGTTCGGTACATTCGGATTCCGGTGAGACTAACGCGAGAGGGCACTCGGGTCAGTCTGGCTCGCATCATCATGGTTCCAAGTCTTGGACGCAGGAGGACATGGACGCGGCCTTGGAGGCCCTTAGGAATCACGATATGAGTCTTACAAAAGCATCAGCAACATTCGGTATACCGTCTACGACCTTGTGGCAGCGTGCTCATCGTCTTGGGATTGATACTCCAAAAAAGGATGGACCCACCAAATCTTGGAGCGACGAGAGTCTGAACAACGCGCTTGAGGCACTCAGGACCGGTACCATCTCGGCTAACAAGGCTTCAAAGGCCTTTGGCATTCCCTCGAGCACCCTGTACAAAATTGCTAGGAGAGAGGGTATCAGATTAGCTGCTCCCTTCAACGCCAGCCCCACTACTTGGTCTCCTGCCGACCTGGACAGAGCCCTCGAGGCAATAAGGTCCGGTCAGACGTCGGTGCAAAGAGCTTCGACCGAATTTGGAATTCCTACAGGAACTCTCTACGGGAGATGCAAGAGGGAAGGCATCGAGCTCAGCAGAAGCAATCCGACGCCTTGGAGCGAAGACGCCATGACGGAGGCTCTGGAAGCTGTTCGATTGGGGCACATGAGCATCAACCAAGCAGccattcattataatttaccATATTCATCTCTTTATGGACGATTCAAGAGAGGGAAGTACGAAGAACCTGTTGTCAGTGAAATGTCTCAAGATGGCGGCAGCCCTCACTATCATCAGAGTCCTAATCAGAATCACTCCACTTCACTTCCCGATCAAATGCCCTATCAGGGCAGCTGA
- Protein Sequence
- MFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAVDNDNMMMITPELLGLMPSGSSVHSDSGETNARGHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGGSPHYHQSPNQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267462; iTF_01271110; iTF_01268935; iTF_01228937; iTF_01269705; iTF_01266800; iTF_01268179; iTF_00979979; iTF_00882860; iTF_00064335; iTF_00676600; iTF_00379532;
- 90% Identity
- iTF_01102694; iTF_01101963; iTF_01306353; iTF_01267462; iTF_01271110; iTF_01268935; iTF_01228937; iTF_01269705; iTF_01266800; iTF_01268179; iTF_00379532; iTF_00064335;
- 80% Identity
- -