Pcoc014164.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- -
- Assembly
- GCA_014839585.1
- Location
- QVOB01026239.1:6008-8432[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-12 2.4e-09 37.2 0.0 1 39 141 180 141 184 0.90 2 4 1.3e-12 2.7e-09 36.9 0.1 2 39 196 233 195 236 0.94 3 4 2.9e-19 6.2e-16 58.2 0.0 1 45 250 295 250 295 0.97 4 4 5.3e-19 1.1e-15 57.4 0.1 1 42 302 344 302 345 0.97
Sequence Information
- Coding Sequence
- ATGTTCTGTCACACAGGGCTAGGTCACTATGGCCACCATCCGGATCCCGGAGAAGTCGATTTACCCCCCGAGACTCAACCTACCCCTCCTAGCGCCACCTTAGTAGGCACCACCATCACCCACCTAAGAGATCCGGATCATCATTCTACAGAGATTCAAAACTGCGACAACGTCAAGATCAAGTTCGAAACGTTACACACGATGGACTCTTCAGACACGATCGATATAGACAGCCACATGTCAGATCGAGCGAGTGTGAGCTCGAAAAACGCCGCTGACAGTGACAACATGATGATGATAACACCGGAATTACTCGGACTTATGCCGTCGGGAAGTTCTGGTCAATCGGACTCCGGTGAGAACAACTCGAGGGGACACAGTGGGCAGTCCAGCTCGCATCACCATGGCTCGAAATCGTGGACACAGGAAGATATGGACGCGGCATTGGATGCGTTAAGAAATCACGACATGAGTCTGACGAAAGCATCAGCAACCTTCGGTATTCCTTCGACAACTTTGTGGCAACGAGCACATCGGCTAGGGATCGATACGCCGAAGAAAGATGGTCCAACAAAATCTTGGAGTGACGAAAGCTTGAACAATGCTTTAGAAGCGTTACGCACCGGCACGATCTCGGCCAATAAAGCGTCAAAAGCGTTTGGTATACCTTCTAGTACGTTGTACAAAATTGCCAGGAGAGAAGGCATCAGGCTGGCGGCGCCGTTCAATGCAAGTCCTACCACGTGGACACCTGCCGACCTCGATCGTGCTTTAGAAGCTATTAGATCCGGCCAGACGTCCGTACAAAGAGCGTCAACGGAATTTGGTATTCCCACAGGTACGCTATACGGAAGGTGCAAACGAGAAGGAATTGAGCTTAGCAGAAGCAATCCTACACCGTGGAGTGAAGATGCTATGACCGAAGCTCTCGAGGCCGTCAGATTAGGACACATGAGCATCAATCAAGCAGCGATCCATTACAATCTACCGTATTCGTCGTTATATGGACGTTTCAAGAGGGGCAAGTATGAAGAGCCAGTCGTCAGCGAAATCTCACAGGATGGCAGCAGTCCGCATTTTCACCAGAGTCCCAATCAGAATCACTCGTCCGCTCTTCCGGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDNVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEISQDGSSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294380;
- 90% Identity
- iTF_00294380;
- 80% Identity
- iTF_01271110;