Lsyp011057.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065470.1:32428201-32437402[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-12 5.5e-09 36.9 0.0 1 39 187 226 187 230 0.90 2 4 4.2e-12 6.4e-09 36.7 0.1 2 39 242 279 241 282 0.94 3 4 1.5e-18 2.3e-15 57.4 0.0 2 45 297 341 296 341 0.97 4 4 1.8e-18 2.8e-15 57.1 0.0 1 42 348 390 348 391 0.97
Sequence Information
- Coding Sequence
- ATGTTCCCGCAGAATCACAGGGACTGTTGGCAGACCGAAGATGAGGAGTGTGCGGAGGTTGCATCAGCAGTAGTCCTGGAATCCTGCCAACGCGACAATAACAACGGTAACAGTACTACAAACAACAACAACGGTGACATGTTCTGTCACACAGGTTTAGGTCATTACGGACATCATCCAGATCCTGGTGAAGTGGATTTACCTCCGGAGACACAGCCAACACCACCTAGTGCAACCCTCGTCGGTACAACAATCACACATCTCAGGGATTCAGACCATCAATCAGCAGAGATCCAAAATTGCGACAGTGTGAAGATAAAATTCGAGACCTTACATACAATGGATTCGTCGGACACAATAGACATCGACAGTCATATGTCAGACAGAGCGAGTGTGAGTTCGAAAAATGCGGGCGACAACGATAATATGATGATGATAACACCCGAACTCCTTGGTCTTATGCCTTCTGGAAACTCCGTCCATTCGGATTCTGGGGAGAATAATTCTAGAGGTCATTCGGGTCAATCGGGATCTCATCATCATGGATCGAAATCATGGACGCAGGAAGATATGGATGCGGCTCTTGATGCTTTGAGGAATCATGACATGAGTCTGACAAAGGCATCCGCAACCTTTGGCATACCCTCGACCACTCTCTGGCAAAGAGCTCATCGCCTAGGAATCGACACTCCCAAGAAGGATGGACCAACAAAATCGTGGAGTGACGAGAGTCTGAATAACGCCCTCGAAGCCTTAAGAACTGGGACAATTTCTGCAAATAAGGCATCGAAAGCTTTTGGAATACCTTCTAGTACTTTGTATAAAATTGCCAGGCGGGAAGGTATCAGACTCGCGGCACCCTTCAATGCGAGCCCCACAACATGGTCACCGGCTGATCTCGACAGGGCATTGGAGGCAATCAGATCCGGTCAAACGTCAGTGCAGAGAGCGTCGACAGAATTTGGAATTCCAACCGGCACTCTCTACGGACGGTGCAAGCGAGAGGGAATTGAACTCAGCAGGAGTAACCCCACTCCGTGGAGCGAGGACGCGATGACCGAGGCTCTTGAGGCTGTtagGCTGGGACACATGAGTATAAACCAAGCCGCAATTCACTACAATTTACCGTATTCGTCGTTATACGGACGTTTCAAAAGAGGTAAATACGAAGATCCAGTAGTCAACGAAATGTCACAAGACGGTAGCAGTCcacattatcatcatcatcaaagTCCAAGTCAAAATCATTCTTCTTCTCTTCCGGATCAAATGCCCTACCAGGGTAGCTGA
- Protein Sequence
- MFPQNHRDCWQTEDEECAEVASAVVLESCQRDNNNGNSTTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSAEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAGDNDNMMMITPELLGLMPSGNSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVNEMSQDGSSPHYHHHQSPSQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294380;
- 90% Identity
- iTF_00676600;
- 80% Identity
- -