Basic Information

Insect: Amphibolips quercusostensackenii
Gene Symbol: -
Assembly: GCA_032357855.1
Location: JAUELO010000085.1:7227473-7241173[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.7e-12 9.6e-09 37.2 0.0 1 39 141 180 141 184 0.90

2 4 6.7e-12 1.1e-08 37.0 0.1 2 39 196 233 195 236 0.94

3 4 2.4e-18 4e-15 57.6 0.0 2 45 251 295 250 295 0.97

4 4 1.2e-09 2.1e-06 29.7 0.0 1 42 302 340 302 341 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.7e-12	9.6e-09	37.2	0.0	1	39	141	180	141	184	0.90
2	4	6.7e-12	1.1e-08	37.0	0.1	2	39	196	233	195	236	0.94
3	4	2.4e-18	4e-15	57.6	0.0	2	45	251	295	250	295	0.97
4	4	1.2e-09	2.1e-06	29.7	0.0	1	42	302	340	302	341	0.93

Sequence Information

Coding Sequence: ATGTTTTGTCACACAGGGCTTGGCCACTACGGGCACCATCCGGACCCTGGAGAAGTGGATCTGCCTCCGGAGACACAGCCAACACCACCTAGTGCTACTCTCGTCGGTACCACCATCACACATCTCAGAGACTCGGATCATCAATCTACAGAAATTCAAAATTGCGACAGCGTCAAGATAAAGTTCGAGACCTTACACACAATGGACTCCTCGGATACAATAGACATCGACAGCCACATGTCGGACAGAGCGAGTGTGAGTTCCAAAACGGCAGGCGACAATGACAACATGATGATGATAACACCCGAACTTCTTGGTCTGATGCCATCTGGAAATTCCGTCCATTCAGATTCTGGTGAGATTAACTCCAGGGGTCATTCTGTCCAGTCAGGGTCGCATCACCACGGCTCGAAGTCCTGGACTCAAGAAGACATGGACGCAGCTTTGGACGCCTTGAGAAATCACGACATGAGTCTCACGAAAGCATCTgCAACATTCGGAATACCCTCGACGACACTGTGGCAAAGAGCTCATCGTTTAGGAATCGACACGCCGAAGAAAGACGGACCAACAAAATCGTGGAGCGATGAGAGTCTCAATAACGCTCTTGAAGCATTGAGGACCGGAACAATATCTGCAAATAAGGCATCTAAGGCCTTTGGAATCCCTTCCAGTACTCTGTACAAAATTGCTAGGAGAGAAGGAATCAGACTTGCAGCTCCGTTTAATGCAAGTCCTACAACTTGGTCGCCAGCTGATCTCGACAGGGCTTTGGAGGCAATTAGGTCCGGCCAAACATCGGTCCAAAGAGCGTCGACGGAGTTTGGAATACCAACTGGAACGCTGTATGGAAGGTGCAAAAGGGAAGGAATTGAACTCAGTAGGAGTAATCCTACTCCGTGGAGCGAGGATGCTATGACGGAAGCTCTTGAGGCTGTTAGatTGGGGCACATTACTGCTATTCACTACAACTTACCGTACTCATCGCTGTATGGGCGTTTCAAAAGAGGGAAATACGATGAGCCAGTAGTCAACGAAATGTCGCAGGATGGTAGCAGTCCCCATTATCACCATCAAAGTCCGAGTCAAAATCACTCTTCTTCCCTTCCCGATCAAATGCCCTATCAGGGCAGCTGA
Protein Sequence: MFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAGDNDNMMMITPELLGLMPSGNSVHSDSGEINSRGHSVQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHITAIHYNLPYSSLYGRFKRGKYDEPVVNEMSQDGSSPHYHHQSPSQNHSSSLPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00294380;
90% Identity: iTF_00294380;
80% Identity: -