Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.3e-12 1.3e-09 37.5 0.0 1 39 73 112 73 116 0.90

2 4 1.9e-12 2e-09 37.0 0.1 2 39 128 165 127 168 0.94

3 4 5.3e-19 5.4e-16 58.0 0.0 2 45 183 227 182 227 0.97

4 4 6.1e-19 6.3e-16 57.8 0.1 1 42 234 276 234 277 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.3e-12	1.3e-09	37.5	0.0	1	39	73	112	73	116	0.90
2	4	1.9e-12	2e-09	37.0	0.1	2	39	128	165	127	168	0.94
3	4	5.3e-19	5.4e-16	58.0	0.0	2	45	183	227	182	227	0.97
4	4	6.1e-19	6.3e-16	57.8	0.1	1	42	234	276	234	277	0.97

Coding Sequence: ATGGACTCATCGGACACCATAGACATAGACAGCCACATGTCGGATTGCGCGAGTGTGAGCTCAAAGCACGCAGCCGAGGGTGACAATATGATGATGATAACGCCCGAACTGCTGGGCCTGATGCCCTCGGGCAGTTCAGTCCACTCCAACTCGGGGGAGAACAATTCTAGGAGTCACTCCGGGGGTTCGGGCCACCACCACGGCTCCAAGTCCTGGACCCAGGAGGACATGGACGCCGCGCTGGACGCTCTGAGAAACCACGACATGAGTTTAACGAAAGCGTCTGCGACATTCGGAATTCCCTCGACAACTCTCTGGCAGCGCGCTCACAGATTAGGGATCGACACTCCAAAGAAAGACGGGCCGACCAAGTCCTGGAGCGACGAGAGTCTAAACAGCGCCCTGGAGGCGCTAAGGACGGGAACAATTTCGGCGAACAAAGCGTCGAAGGCTTTCGGAATTCCCTCGAGCACTCTCTATAAAATAGCCAGGCGGGAAGGAATAAGATTGGCTGCGCCATTCAATGCCAGTCCCACCACCTGGTCGCCCGCGGACCTGGACAGGGCTCTGGAAGCTATCAGGTCAGGACAGACCTCCGTCCAGAGAGCTTCCACCGAGTTCGGCATACCCACGGGGACTCTCTACGGCAGATGCAAGAGAGAAGGAATTGAATTGAGTCGGAGTAATCCGACTCCTTGGAGCGAAGATGCCATGACTGAAGCTCTTGAAGCTGTCAGATTGGGACACATGAGTATTAACCAAGCAGCGATTCACTATAATCTGCCATACTCATCTCTATACGGGCGATTCAAGCGCGGAAAATACGAAGAGCCAGTTGTGACGGAGCTTTCTCAGGACGGGACGAACCCTCACTTCCACCAGAGCCCGCACCACAACCACTCTTCCTCGCTCCCGGATCAGTTGCCCTACCAGGGCAGCTGA
Protein Sequence: MDSSDTIDIDSHMSDCASVSSKHAAEGDNMMMITPELLGLMPSGSSVHSNSGENNSRSHSGGSGHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVTELSQDGTNPHFHQSPHHNHSSSLPDQLPYQGS

Sequence clustering based on sequence similarity using MMseqs2