Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.4e-12 8.2e-09 37.3 0.0 1 39 188 227 188 231 0.90

2 4 5.1e-12 9.5e-09 37.0 0.1 2 39 243 280 242 283 0.94

3 4 1.8e-18 3.4e-15 57.7 0.0 2 45 298 342 297 342 0.97

4 4 0.011 20 7.2 0.2 1 13 349 361 349 361 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.4e-12	8.2e-09	37.3	0.0	1	39	188	227	188	231	0.90
2	4	5.1e-12	9.5e-09	37.0	0.1	2	39	243	280	242	283	0.94
3	4	1.8e-18	3.4e-15	57.7	0.0	2	45	298	342	297	342	0.97
4	4	0.011	20	7.2	0.2	1	13	349	361	349	361	0.92

Coding Sequence: ATGTTCCCGCAGAATCACAGGGACTGCTGGCAGACCGAAGATGAGGAGTGTGCGGAGGCAACAGCAGCAGCAGTAGTCCTGGAATCCTGCCAACGCGACAATAACAACGGTAACGGTACTACAAACAACAACAACGGTGACATGTTTTGTCACACAGGTCTAGGCCACTACGGGCACCATCCGGATCCTGGAGAGGTCGATTTGCCTCCTGAGACTCAGCCAACACCACCTAGTGCTACTCTCGTCGGCACTACAATTACACATCTCAGGGACTCGGATCATCAATCCACAGaaatccaAAATTGCGACAGCGTGAAGATAAAGTTCGAGACCTTACATACAATGGATTCTTCAGATACAATAGACATCGACAGTCACATGTCAGACAGAGCAAGCGTGAGTTCCAAAACGGCAGGAGACAACGACAACATGATGATGATAACACCCGAACTTCTTGGTCTGATGCCTTCTGGAAATTCCGTCCATTCGGATTCTGGCGAGAACAACTCCAGGGGTCACTCTGGCCAATCAGGATCGCACCATCATGGTTCGAAATCCTGGACTCAGGAAGACATGGATGCAGCTTTAGACGCCTTGAGAAATCACGACATGAGCCTCACGAAAGCATCGGcgACATTTGGAATACCTTCGACGACACTGTGGCAAAGGGCTCATCGTTTAGGAATCGACACACCCAAGAAAGACGGACCAACCAAATCGTGGAGTGATGAAAGTCTCAATAACGCCCTTGAAGCTTTGAGGACCGGAACAATATCTGCGAATAAAGCTTCCAAGGCTTTTGGGATTCCTTCCAGTACCTTGTATAAAATTGCTAGGAGAGAGGGGATCAGGCTTGCAGCACCGTTTAATGCCAGTCCTACAACTTGGTCGCCAGCCGATCTCGACAGGGCTTTGGAGGCAATTAGGTCTGGTCAAACATCGGTGCAGAGAGCGTCGACGGAATTTGGTATACCAACTGGGACGCTTTATGGAAGGTGTAAGCGGGAAGGAATTGAACTCAGTAGGAGTAATCCTACTCCGTGGAGCGAAGACGCCATGACCGAAGCTCTTGAGGCTGTTAGGTAA
Protein Sequence: MFPQNHRDCWQTEDEECAEATAAAVVLESCQRDNNNGNGTTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAGDNDNMMMITPELLGLMPSGNSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVR

Sequence clustering based on sequence similarity using MMseqs2