Cido011614.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calameuta idolon
Gene Symbol
salm
Assembly
GCA_030142285.1
Location
JARQSV010000648.1:308452-318301[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 6.6e-06 0.00048 20.5 0.9 1 23 497 519 497 519 0.98
2 9 1.3e-05 0.00094 19.6 2.1 1 23 525 547 525 547 0.98
3 9 0.082 5.9 7.6 3.8 2 23 1006 1027 1005 1027 0.98
4 9 5.7e-08 4.1e-06 27.0 0.6 1 23 1033 1055 1033 1055 0.97
5 9 7.9e-05 0.0057 17.1 2.6 1 23 1065 1087 1065 1087 0.98
6 9 0.0027 0.2 12.3 1.9 2 23 1476 1497 1475 1497 0.97
7 9 0.035 2.5 8.8 0.9 1 14 1503 1516 1503 1518 0.92
8 9 1.3e-06 9.7e-05 22.7 2.1 3 23 1724 1744 1722 1744 0.96
9 9 2.6e-07 1.9e-05 24.9 0.9 1 23 1750 1772 1750 1772 0.98

Sequence Information

Coding Sequence
ATGCAGCTGATGCGATGGAGCATCACACGGCGACTCGAGAGTCGCAGTAACAAGCAGCGTCGCGACATCAAGATCTGTCAGGCTGACCGTACTACTTCGCCTGGGTCCCGTGATATCGCCTACTCTCAGTATTCCGGGGAAGGAATCGAGTCCGGGTCAGACGGAGAAGAAAGTGCTGGAGGAGGCATCGTAGGAGGGGTAGAAGGaagtggcggtggtggtggtgttggtGGCGGTGAAGTAACAGGGGGTCCAGTCGACGAGGCCGTAGACCTTAGGCGATCTCATCATGGAGAGGAGGATGAGAGGGATCGAGAGGATTTACCAAtggacgaggacgaagaggacgaggagggtGTCGAAGATCCAGGGGATcaagacgaggaggaggaaggaacGCGAAAGCAGGTGATGCGACATCGTCAGGATGCGGAGAACAACAACAGCTTTGTTGAAGGAGGACCACCAAGTGGGATCTTCGGTCCACCTGGAGCAAGTCACGTGACCCTCGAGGCCCTCCAGAATACGAAAGTCGCAGTGGCGCAATTCGCAGCCACCGCGCTAGCTGGAGGTGCCGACAGTGAGGCGGCCCTTCAGGATTTGGCGCTGCTTCAGAGTACTCTCTACACCCTCCAGCATCAGCAGGTCTTCCAGTTGCAATTGATAAGTCAACTACAGCAACAGCTCTCAATAACGCATGGTCAGCCGACGGTTCCGGGAACTCCAACTGGAACAGGGCTACCGGGTACGGGGGTGACTTCGACGACAACGACAAGCACGACAACAAGCACTAGTCACCCAGGTACTCCGTTCGGCAATGTCGGATGTGCGAGCAGTGCTATCGGTAGTGGTACCAGTGCTGGTATTGGAGGTGGTATTGCACGTGTCGGTAGCGGTATGGGAGGTGCTGCTTGTGTTGATACTCGTGACACATCGTCGTCAACAGACAACAAGGAAGCATCACCCTCGCCAACGATTCACCCGAAGCCTCTCTCGGCCCTGACTTCGCCGCCGTCCTCCCGGCCACCGAGCCATCATCGACAGTCATCGCCGGGACTACTCCAGTCACAGAGTCAAGAACGAAGCACTCCCTCAGCCAGTGGTGCTGGTAGTGGTGGCAGTACATCGCCATTGAGTCTACCGCTGCCGTTGTCGCTCTCGCTTCCGTCGTCGgcagcagcggcagcggcGGCAGCTGCTGCAGCCGCAGCAAGTCAAATGTCCCTCTCCCATCAAATGCCGCCTCTCTGCTCGATAAGCTCCTCACTGGCCTCGTCGATCATCACAAACACGGACCCGCCGCCCCTTCACGAGCCCAACACCCTGGAGATGCTACAGAAACGAGCGCAGGAGGTGCTCGACAATGCGAGTCAGGGCCTCCTGGCGAACAATCTAGCCGATGAGCTCGCGTTCAGGGGCGGCAAGGGCTCACGACTGTCACCCTACGATTCGAAGTCCTCTGGTGGGCGCGGCGAGCCCTTCTTCAAGCACCGCTGTCGTTACTGCGGCAAGGTCTTTGGCAGTGATTCGGCGCTCCAGATTCACATCCGGTCCCATACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGAAGCCGATTCACCACCAAAGGAAACCTCAAGGTCCACTTCCAGAGGCACACGGCCAAGTTTCCACACGTTAAGATGAATCCGAATCCCGTGCCCGAGCACCTTGACAAGTACCATCCCCCCCTTCTCCAGCAGCTCGCGGCTTCCGGGCAAAGGCCCTTACCGTccccgccaccgccaccgccgccgccgccgccccCGCCACCGCCAgcgtcgtcctcctcctcctcgtcgtcgtcgccatCATCGTCGTCGCATCATCCGTCGTTGTGTCACCCTGGCtccgcagcagcagcagccgccGCGGCCGCCGCCGCGGCTCATGGTTTCCTTCCCCCTCAGCCACCGTTACCTCTTGCTCTAACCCTCCCCGTTATTCCACCCCTTTACCGATCACCCCTCCTTAATCACAGGGAGGAACAAGAGGTTCCGGAGAATCTCAGTAAAACCACTGTCCCGTCTCCTCACACATCGCCTCCTGTTCCAACGGGACATCATCATCTCCCTTTACCCAGTTCCCATCATCCTCACCTTCACCATCAATCGAACTCGCATCATTCCTCCTTTCACGAGCATCATCAGATgaaacagcagcagcattTGCATCACCATCACGCTCAACaacatcatcttcatcatcacGAGCAGAGTACCTCGATAGCATCCTCGGCCGCGCAAAGAGACGAAATTAAACTAGAACACCAATCACCTACTCAAGACTCCTACCAACAACAATCACGACCAACGAGTGGAGAAGATTCCGAGAGGATAACGCCGAAGCGAGAACCAGAGGATGCCGAGGAGCAACCCGAGGACGAAATAGAGGAGTACGAGGATAGTTCCCGGAGATACCTGAACAACTCGTCACCATCCTCGACGGCGAATCCTCCGTCACAACCCCAACCTTACGAAGATTGTAGTATGGACAGTAGTAAAATGAGTGCCCGACTTGAGGCCGAAAATGAAATAGACGGGGACGGGGATGAAGAGATGGAAGAACAGCCAGAGAATCTCTCAGGTCGCGGTACTTCGAGTAGACTTGGTCATCAGAGTCTCGGCTATCCTGGTGCCTCTCCCGCAAGTAGTAGTGCCAGTAGCAGTAGCCTCCAAACGACCTTCGCGGGAATTTTATTTCCCACGGGGCCACCACTACCGCCAGTGACTTCGTCCTCCGCCTCGACGATTCATCATCCTCAGCTGATTCACCACGTGTCGTCCAGTGGTGGCGGAACTACTCCCACCGCACCTGGATGTGAAATGATCGTCGATCCTGCCCGTGATCCTGCCATATACTCGAGTCTACTTCCACGACCGGGGAGCAATGACAATTCCTGGGAGAGTCTTATCGAAATTACCAAAACCTCAGAGACGTCGAAGCTTCAGCAGCTCGTTGACAACATCGAGCACAAGTTGACGGATCCTAATCAGTGCGTCATCTGTCACAGGGTACTCTCCTGTAAGAGTGCACTCCAGATGCACTATCGTACTCATACAGGCGAACGGCCATTTAAGTGCAAAATATGTGGCAGAGCCTTCACCACCAAGGGCAACCTTAAGACTCACATGGGGGTGCATCGAGCGAAACCACCTCTGAGGGTGCTTCATCAATGTCCGGTATGTCACAAAAAGTTCACAAACGCCCTGGTACTTCAGCAGCACATACGACTTCATACGGGCGAACCTACGGATCTCAGTCCGGAACAGATTCAGGCGGCTGAAGTTAATGAATTTCCACCTGGTTATCCACATCATCCTCTGGCGTCGTTTCTACCCCAGGGTTTCCCGGCGCTTCATCCTGCAGGGAGTGGGTTCCCCTTGGGGTTCCCAGGTTCTCGCCAGCACATAGCCGAAAGAGCTCCTCATGAGAATGACCTCGACTCAAAGGACTCTCGAGAACATCTGCATCACCCGCTTCTTCCctctcatcatcatcatctgtCGCACCAACAGAATGCTCAGCATCACTTGCAACTGCATCAACAACACCAAAAGTACTCAGAAGAGCGGAGCTCCACCGCAGGTGATGACGAAATGGCTGAAGATcaagaagaggaggacgaCATCACTCGAGAAGATGATGAGAGGTGCGATGAACGAGAGAGGCGAAGTATGGAAGAGGCTGAAAATGATCCGGAAAGAGACGAAACCGAAGAggagcatcatcatcatcatcatcaacagCAACAACGGCTGTCGCTACCAAGCTTTTCGACGTCTCTGGCGGCCCTCGAGAATCAGGTGCGAACGATCACGACGACAGTGGCTGGTGGTAGCTCCAGGTCACCTGGACCCCTCCGATATAACGGAAGTGAAAAGAGCACCAGTCCCCCGGCGATACGAAATGGAAGCGGCGGTGTTCCGCTTGACCTGACCCCACGCTCTTCCTCGACCCCGGTGGGTGGCTCGACGCCTACCCCGACGCCGCCGTCCCCACCGACAGCAGGAGCATCCTTGGCATCGCCATCCGCCTCGTCACAGAGCACAGCGCATCACGCGCATGCTTTCGGAATGTTCGCAGGCCTTCTTAGGGCGGTCTCATCGCCACCGTCGAGTCTCGGTGGTGGCGGCGCCAGCGGCATTGGCGGTAGCAGCACCAGCACTCCCAGCGTATCCGGTACAACGTTAAACAGCGTAGTCGCGATGACCGCTGGCAATCCAGTCCTCGACGAAGGCGTCGGTAGCGTCGTTGGTGTCAGTGGCGTCGGCGGTGTCGGTGGCAGTAGCGGCGGCGGGGGCGCTCTTGCCTCTCTAACGACGTCAGCCGTTCTCGCTGCCACTTCTACCTACAATCCCCTCGGCCTGGCTGTCGGAGGGCCAGCAGTCCGCGGTAACACGACATGCAATATCTGTTACAAGACGTTCGCTTGTAACTCGGCCTTGGAGATTCACTACCGGAGCCACACGAAGGAACGACCGTTCAAGTGCACCATTTGCGACCGGGGCTTTTCCACGAAGAATGAACGCGAACCCTGGTTGACGAATACGTGTACCTGTGTCGATCGGAGGAACTCCCTATCCAAGACCGGCACCGAGTCCACTAGCACCACTAGCACGACTAGCACCACTATCACCAACATCCCTTCGTCCGAGTCGCATGGCGGCAATCGGACGAGGCCGAAACGCAGGCGGCGACGTCCTGAGGAGAGGAAGCCCCGGGGGCGGACTGGTGGCAACGAATGGGGGCGGGGAGTGATCTCTGGCTACGCTGCTCTCCACCTGCCCCCGATGCTGCCTCCCGCCCTCGGACTTCTCGCCTCGGACCACGTCTTCCTGGGAAACATGAAGCAGCACATGCTCACACACAAGATCCGGGACATGCCACCTCATCTCTTTGCCGATGCGAAACAGACGggtcagcaacagcagcaacagccaCAGCAGCAGGATCATGAGAACTCGAGGAGTCCTATGTGTGCGGATGAGTCGAGTCTACCACCTCCagcacctccaccaccaccaatgCCACCGTCGTCCGTAGAAGCTGTAGTAGCAGCCGCGGCGATCCCTGTCAAGAGATCACCACCCGAGGGTGATTTACCCGCGCCCAAGAGGCCGCCCAGCATGCCCAGCAAGCACTTGTGCCAGGTTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACACATACGGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAACCTCAAGGTGCACATGGGAACGCATATGTGGACGaacggagcgtcgcgacgaggTCGCCGAATGTCATTGGATCTACCGCCACTGCCCATCACACCCAAGGACTCGGAGTTTCTTCAACGACGACCGGATCTCTTTTATCCTTATCTACCCGCGCCGTTCCTTAATGGCGTTCAGCAAAAACTGAACGAGATCTCGGTCATACAAAGTAACAATGGACTAACATCGCCACATAGCGCAAGTGCAGCCAAGTACGCTGGTCTCTTCGGATCAGTTTACGGAGGTGTCgctggtggcggtggcggtgctGGCGGTGGCGCCGGAGGTGGCGGTATCGCTGCGGGATTCCCTGTTGACAAACAGCCAATGGCGCCAAGTAATGGCTCCCTAGGAGAATCAAAATCCCTATCAGCAGGGTCCATGCTCTTCCGCACACCATCTCCATCTCATTCACCTGGCACTCCATCGTCGAACACCGGCAATCAGAATTCCGCCAGTGTACCATCCTGGGGAGGTAGCGATCCGCTGCAACACAGATTCGAGCGTGAAACTTCGTCCAGGACGGAGGAGAACGCGACTCCGCCAACGGCAAGACTACCACCTACACCGGCGCCAAGAGGAGAAGGTCTGGCAGCCTAG
Protein Sequence
MQLMRWSITRRLESRSNKQRRDIKICQADRTTSPGSRDIAYSQYSGEGIESGSDGEESAGGGIVGGVEGSGGGGGVGGGEVTGGPVDEAVDLRRSHHGEEDERDREDLPMDEDEEDEEGVEDPGDQDEEEEGTRKQVMRHRQDAENNNSFVEGGPPSGIFGPPGASHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHGQPTVPGTPTGTGLPGTGVTSTTTTSTTTSTSHPGTPFGNVGCASSAIGSGTSAGIGGGIARVGSGMGGAACVDTRDTSSSTDNKEASPSPTIHPKPLSALTSPPSSRPPSHHRQSSPGLLQSQSQERSTPSASGAGSGGSTSPLSLPLPLSLSLPSSAAAAAAAAAAAAASQMSLSHQMPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSSGGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQLAASGQRPLPSPPPPPPPPPPPPPPASSSSSSSSSPSSSSHHPSLCHPGSAAAAAAAAAAAAHGFLPPQPPLPLALTLPVIPPLYRSPLLNHREEQEVPENLSKTTVPSPHTSPPVPTGHHHLPLPSSHHPHLHHQSNSHHSSFHEHHQMKQQQHLHHHHAQQHHLHHHEQSTSIASSAAQRDEIKLEHQSPTQDSYQQQSRPTSGEDSERITPKREPEDAEEQPEDEIEEYEDSSRRYLNNSSPSSTANPPSQPQPYEDCSMDSSKMSARLEAENEIDGDGDEEMEEQPENLSGRGTSSRLGHQSLGYPGASPASSSASSSSLQTTFAGILFPTGPPLPPVTSSSASTIHHPQLIHHVSSSGGGTTPTAPGCEMIVDPARDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYPHHPLASFLPQGFPALHPAGSGFPLGFPGSRQHIAERAPHENDLDSKDSREHLHHPLLPSHHHHLSHQQNAQHHLQLHQQHQKYSEERSSTAGDDEMAEDQEEEDDITREDDERCDERERRSMEEAENDPERDETEEEHHHHHHQQQQRLSLPSFSTSLAALENQVRTITTTVAGGSSRSPGPLRYNGSEKSTSPPAIRNGSGGVPLDLTPRSSSTPVGGSTPTPTPPSPPTAGASLASPSASSQSTAHHAHAFGMFAGLLRAVSSPPSSLGGGGASGIGGSSTSTPSVSGTTLNSVVAMTAGNPVLDEGVGSVVGVSGVGGVGGSSGGGGALASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKNEREPWLTNTCTCVDRRNSLSKTGTESTSTTSTTSTTITNIPSSESHGGNRTRPKRRRRRPEERKPRGRTGGNEWGRGVISGYAALHLPPMLPPALGLLASDHVFLGNMKQHMLTHKIRDMPPHLFADAKQTGQQQQQQPQQQDHENSRSPMCADESSLPPPAPPPPPMPPSSVEAVVAAAAIPVKRSPPEGDLPAPKRPPSMPSKHLCQVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLTSPHSASAAKYAGLFGSVYGGVAGGGGGAGGGAGGGGIAAGFPVDKQPMAPSNGSLGESKSLSAGSMLFRTPSPSHSPGTPSSNTGNQNSASVPSWGGSDPLQHRFERETSSRTEENATPPTARLPPTPAPRGEGLAA