Spar011618.1
Basic Information
- Insect
- Syrista parreyssii
- Gene Symbol
- salm
- Assembly
- GCA_030142615.1
- Location
- JARQTG010000354.1:315617-325484[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6.8e-06 0.00044 20.5 0.9 1 23 497 519 497 519 0.98 2 9 1.4e-05 0.00088 19.6 2.1 1 23 525 547 525 547 0.98 3 9 0.085 5.5 7.6 3.8 2 23 1011 1032 1010 1032 0.98 4 9 5.9e-08 3.8e-06 27.0 0.6 1 23 1038 1060 1038 1060 0.97 5 9 8.2e-05 0.0053 17.1 2.6 1 23 1070 1092 1070 1092 0.98 6 9 0.0029 0.18 12.2 1.9 2 23 1503 1524 1502 1524 0.97 7 9 0.036 2.4 8.8 0.9 1 14 1530 1543 1530 1545 0.92 8 9 1.4e-06 9e-05 22.7 2.1 3 23 1751 1771 1749 1771 0.96 9 9 2.7e-07 1.8e-05 24.9 0.9 1 23 1777 1799 1777 1799 0.98
Sequence Information
- Coding Sequence
- ATGCAGCTGATGCGATGGAGCATCACACGGCGACTCGAGAGCCGCAGTAACaagcagcgtcgcgacgtcaagATCTGTCAGGCTGACTGTACTACTTCGCCTGGGTCCCGTGATATCGCCTACTCTCAGTATTCCGGGGAAGGAATCGAGTCCGGGTCAGACGGAGAAGAAAGTGCTGGAGGAGGCATCGTAGGAGGGGTAGAAGGaagtggcggtggtggtggtgttggTGGCGGTGAAGTAACAGGGGGTCCAGTCGACGAGGCCGTAGACCTTAGGCGATCTCATCATGGAGAGGAGGATGAGAGGGATCGAGAGGATTTGCCAATggacgaggacgaagaggacgaggagggTGTCGAAGATCCAGGGGATcaagacgaggaggaggaaggaacGCGAAAGCAGGTGATGCGACATCGTCAGGATGCGGAAAACAACAACAGCTTTGTCGAAGGTGGACCACCAAGTGGGATCTTCGGTCCAGCTGGGGCCAGTCACGTGACCCTTGAAGCCCTCCAGAATACGAAAGTCGCCGTGGCGCAATTTGCAGCCACAGCACTAGCTGGTGGTGCCGACAGCGAGGCGGCCCTCCAGGATTTGGCGCTGCTTCAGAGTACCCTCTACACCCTCCAGCATCAGCAGGTCTTCCAGCTGCAATTGATAAGTCAACTGCAGCAACAGCTCTCGATAACGCATGCTCAGCCGACGATTCCGGGGACTCCAACTGGAACAGGTCTACCGGGCACGGGGGTAACTTCGACGACAACGACAAGTACGACAACAAGCACTAGTCATCCGGGTACTCCGTTCGGCAGTGTCGGAGGTGCGAGTAATGCTGTCGGCAGTGGTACCAGTGCTGGTATTGGAGGTGGTATTGCACGTGTCGGTAGCGGTATGGGAGGTGCTGCTTGCGTTGATACGCGTGACACGTCGTCGTCAACAGACAACAAGGAAGCATCACCCTCGCCAACGATTCACCCAAAGCCTCTCTCGGCCCTGACTTCGCCGCCGTCCTCCCGGCCACCGAGCCATCATCGACAGTCGTCGCCGGGACTGCTCCAGTCACAGAGTCAAGAACGAGGCACTCCCTCAGCTGGTGGTGCTGGTAGTGGTGGCACCACATCGCCATTGAGTTTACCACTGCCGTTGTCGCTCTCGCTTCCGTCGTCGGCGGCAgcagcggcggcggcggctgCTGCAGCCGCAGCAAATCAAATGTCCCTCTCCCACCAAATGCCGCCTCTCTGCTCGATAAGCTCCTCACTGGCCTCGTCGATCATCACGAACACGGACCCGCCGCCCCTCCACGAGCCCAACACCCTGGAGATGCTACAGAAACGAGCGCAGGAGGTGCTCGACAATGCGAGTCAGGGCCTCCTGGCGAACAATCTAGCCGATGAGCTCGCGTTCAGGGGCGGCAAGGGCTCACGACTATCACCCTACGATTCGAAGTCCTCCGGTGGGCGCGGAGAGCCCTTCTTCAAGCACCGCTGTCGCTACTGCGGCAAGGTCTTTGGCAGTGACTCGGCGCTCCAGATTCACATCCGGTCCCATACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGAAGCCGATTCACCACCAAAGGAAACCTCAAGGTCCACTTCCAGAGGCACACGGCCAAGTTTCCACACGTTAAGATGAATCCGAATCCCGTGCCCGAGCACCTTGACAAGTACCATCCTCCCCTTCTCCAGCAGCTCGCGGCTTCCGGGCAAAGGCCCTTACCGTCcccgccaccgccaccgccgccgccgccgccccCGCCACCGCCAGcgtcgtcctcctcctcctcgtcgtcgtcgccatCGTCGTCGCATCATCCGTCGTTGTGTCACCCCGGCtccgcagcagcagcagcagcagcagcagccgcgGCCGCCGCCGCAGCGGCTCATGGTTTCCTTCCCCCTCAGCCACCATTACCTCTTGGCCTAACCCTCCCTGGAATACCACCACTTTACCGATCACCCCTCCTTAATCACAGGGAGGAGCAAGAGGTTCCGGAGAATCTCAGCAAGACCACTGTCCCGTCTCCTCACACATCGCCTCCTGTTCCAACGGGACATCATCATCTCTCTTTACCTAGTTCCCATCATCCTCACCTTCACCATCAATCGAACTCGCATCATTCCTCCTTTCACGAGCATCATCAGCTgaaacagcagcagcacctccatcaccatcatcacgCTCAACAACAACATCATCTCCATCATCACGAGCAGACTACCTCGATAGCATCCTCGGCCGCGCAAAGAGACGAGATTAAACTAGAACACCAATCACCTACTCAAGACTCATACCAGCAATCACGACCAACGAGTCGAGAAGATTCCGAGAGGATAACGCCAAAGCGAGAACCAGAAGATGCTGAGGAGCAACCCGAGGACGAAACAGAGGAGTACGAGGAGAGTGCGAGGAGATACCTAAACAACTCATCGCCATCCTCGACGGCGAATCCTCCGTCACAGCCACAACCTTACGAAGATTGTAGTATGGACAGTAGTAAGATGAGTGCCCGACTTGAGGCTGAAAACGAAATAGACGGAGATGGAGACGAGGAGATGGAAGAACAGCCAGAGAATCTCTCAGGTCGTGGTACTTCGAGTAGACTTGGTCACCAGAGTCTCGGCTATCCTGGTGCCTCTCCCGCGAGCAGTAGTGCCAGTAGCAGTAGTCTCCAAACGACCTTCGCGGGAATTTTATTTCCCACGGGGCCACCACTACCACCAGTGGTGACTTCGTCCTCAGCCTCGACGATCCATCATCCTCAGCTGGTTCACCACGTCCCATCCAGTGGTGGCGGCACTACTCCCACCGCACCTGGATGTGAAATGATCGTTGATCCTGCCCGTGATCCTGCCATATACTCGAGCCTACTGCCACGACCGGGGAGCAACGACAACTCCTGGGAAAGTCTTATCGAAATCACCAAAACCTCAGAGACGTCGAAGCTCCAGCAGCTGGTTGACAACATCGAGCACAAGTTGACGGATCCCAATCAGTGCGTCATCTGCCACAGGGTACTCTCCTGTAAGAGTGCACTCCAGATGCACTATCGTACTCATACAGGCGAACGGCCATTCAAGTGCAAAATATGCGGCAGAGCCTTCACCACCAAAGGCAACCTTAAGACTCACATGGGGGTGCATCGAGCTAAACCACCTCTCAGGGTGCTTCATCAGTGTCCGGTATGTCACAAGAAATTTACAAACGCCCTGGTACTTCAGCAGCACATACGACTTCATACCGGTGAACCTACGGATCTTAGTCCGGAACAGATTCAGGCGGCTGAAGTTAATGAATTCCCACCTGGTTATCCGCATCATCCTCTGGCGTCGTTTCTACCCCAGGGATTCCCGGCGCTTCATCCCGCAGGGACTGGATTCCCCTTGGGGTTCCCAGGTTCTCGTCAGCACATAGCCGAAAGAACTCCTCACGAGAACGACGTCGACTCAAAGGACTCTCGAGAACATCTGCATCATCCGCTTCTTCcctctcatcatcatcatctttcGCACCAACAGAATGTTCAGCATCACCTGCAACAGCATCAACAGCAACAAAAGTACTCAGAGGAGCGGAGCTCCACCGCAGGTGATGACGAAATGGCTGAAGATCAAGACGAAGAGGATGACATCACTCGAGAGGATGATGAGAGGTGCGATGAACGGGAGAGACGGAGTATGGAAGAGGCTGAAAATGATcaggagagagaggagaacgAGGAGGAGCATCATCATTCTCACCATCATCAACAACACCGGTTGTCGCTACCAAGTTTTTCGACATCCCTGGCGGCCCTTGAGAATCAGGTGCGAACGATCACGACGACAGTGGCTGGCGGTAGCTCCAGGTCACCCGGACCCCACCGATATAACGGAAGTGAAAAGAGCACCAGTCCCCCGACGATAGGAAATGGAAGCGGCGTTGTTCCGCTAGACCTGACCCCACGCTCTTCCTCGACCCCGGTGGGTGGCTCGACGCCTACCCCGACGCCGCCGTCCCCACCGACAGCAGGAGCATCCTTGGCATCGCCATCCGCCTCGTCACAGAGCACAGCGCATCACGCGCATGCTTTCGGAATGTTCGCAGGCCTTCTTAGGGCGGTCTCATCGCCACCGTCGAATCTCGGTGGTGGCGGCGCCAGCGGCATGGGCGGTAGCAGCACCAGCACTCCCAGCGTATCCGGTACAACGTTAAACAGCGTAGTCTCGATGACCGCTGGCAATCCAGTCCTCGGCGAAGGCGTCGGTAGCGTCGTTGGTGTCAGTGGCGTCGGCGGTGTCGGTGGCAGTAGCGGCGGCGGGGGCGGTAGCggtggtggcggaggtggcgGTGAAGGTGCAGGTAGCAGCACTACCGCCACCACCGGAGGAGCACTTGCCTCTCTAACGACGTCGGCCGTTCTCGCTGCCACTTCTACCTACAATCCCCTCGGCCTGGCTGTCGGAGGGCCAGCAGTCCGCGGTAACACGACATGCAATATCTGTTACAAGACGTTCGCTTGTAACTCGGCCTTGGAGATTCACTACCGGAGCCACACAAAGGAACGACCGTTCAAGTGCACCATTTGCGACCGGGGCTTTTCCACGAAGAATGAACGCGAACCCTGGTTGACGAATACGTGTACCTGTGTCGATCGGAGGAACTCCCTATCCAAGACCGGCACCGAGTCCACTAGCACCACTAGCACGACTAGCACCACTATCACCAACATCCCTTCGTCCGAGTCGCATGGCGGCAATCGGACGAGGCCGAAACGCAGGCGGCGACGTCCTGAGGAGAGGAAGCCCCGGGGGCGGACTGGTGGCAACGAATGGGGGCGGGGAGTGATCTCTGGCTACGCTGCTCTCCACCTGCCCCCGATGCTGCCTCCCGCCCTCGGACTTCTCGCCTCGGACCACGTCTTCCTGGGAAACATGAAGCAGCACATGCTCACACACAAGATCCGGGACATGCCATCTCACCTCTTTGCCGACGCCAAACAAACAggtcagcagcagcaacaacaaccgCAGCAGCAGGATCATGAGAACTCGAGGAGTCCTATGTGTGCTGATGAGTCGAGTCTACCACCTCCagcacctccaccaccaccaatgCCACCGTCGTCCGTAGAGGCTGTCGTAGCAGCCGCGGCGATGCCTGTCAAGAGATCACCACCCGAGGGTGATTTACCTGCGCCGAAGAGGCCGCCCAGCATGCCCAGCAAGCACTTGTGCCAGGTTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACACACACGGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAACCTCAAGGTGCACATGGGAACGCATATGTGGACGAACGGGGCATCGCGACGAGGTCGCCGAATGTCATTGGATCTACCGCCGCTACCCATCACACCCAAGGACTCAGAGTTTCTTCAACGACGACCGGATCTCTTTTATCCTTATCTACCCGCGCCGTTCCTTAATGGCGTCCAGCAAAAACTGAACGAGATCTCGGTCATACAAAGTAACAATGGGCTAACATCACCGCATAGCGCAAGTGCAGCCAAGTACGCTGGTCTCTTTGGATCAGTCTATGGAGGTGTCGCTGGTGCTGGTGGCGGTGCTGGTGGTGGCGCCGGCGGTGGCGGTATCGCTGCGGGATTCCCTGTCGACAAGCAGCCGATGGCACCGAGTAATGGCTCCCTAGGAGAATCAAAATCCCTGTCAGCAGGGTCCATGCTTTTCCGCACACCATCTCCGTCTCATTCACCCGGCACTCCATCGTCGAACACCGGCAATCAGAATTCTGCCAGTGTACCATCCTGGGGAGGTAGCGATCCGCTGCAACATAGATTCGAACGTGAAACTTCGTCCAGGACGGAGGAGAACTCGACGCCGCCAACAGCAAGATTACCACCTACACCGGCGCCAAGAGGAGAAGGTCTGGCCGCCTAG
- Protein Sequence
- MQLMRWSITRRLESRSNKQRRDVKICQADCTTSPGSRDIAYSQYSGEGIESGSDGEESAGGGIVGGVEGSGGGGGVGGGEVTGGPVDEAVDLRRSHHGEEDERDREDLPMDEDEEDEEGVEDPGDQDEEEEGTRKQVMRHRQDAENNNSFVEGGPPSGIFGPAGASHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHAQPTIPGTPTGTGLPGTGVTSTTTTSTTTSTSHPGTPFGSVGGASNAVGSGTSAGIGGGIARVGSGMGGAACVDTRDTSSSTDNKEASPSPTIHPKPLSALTSPPSSRPPSHHRQSSPGLLQSQSQERGTPSAGGAGSGGTTSPLSLPLPLSLSLPSSAAAAAAAAAAAAANQMSLSHQMPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSSGGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQLAASGQRPLPSPPPPPPPPPPPPPPASSSSSSSSSPSSSHHPSLCHPGSAAAAAAAAAAAAAAAAHGFLPPQPPLPLGLTLPGIPPLYRSPLLNHREEQEVPENLSKTTVPSPHTSPPVPTGHHHLSLPSSHHPHLHHQSNSHHSSFHEHHQLKQQQHLHHHHHAQQQHHLHHHEQTTSIASSAAQRDEIKLEHQSPTQDSYQQSRPTSREDSERITPKREPEDAEEQPEDETEEYEESARRYLNNSSPSSTANPPSQPQPYEDCSMDSSKMSARLEAENEIDGDGDEEMEEQPENLSGRGTSSRLGHQSLGYPGASPASSSASSSSLQTTFAGILFPTGPPLPPVVTSSSASTIHHPQLVHHVPSSGGGTTPTAPGCEMIVDPARDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYPHHPLASFLPQGFPALHPAGTGFPLGFPGSRQHIAERTPHENDVDSKDSREHLHHPLLPSHHHHLSHQQNVQHHLQQHQQQQKYSEERSSTAGDDEMAEDQDEEDDITREDDERCDERERRSMEEAENDQEREENEEEHHHSHHHQQHRLSLPSFSTSLAALENQVRTITTTVAGGSSRSPGPHRYNGSEKSTSPPTIGNGSGVVPLDLTPRSSSTPVGGSTPTPTPPSPPTAGASLASPSASSQSTAHHAHAFGMFAGLLRAVSSPPSNLGGGGASGMGGSSTSTPSVSGTTLNSVVSMTAGNPVLGEGVGSVVGVSGVGGVGGSSGGGGGSGGGGGGGEGAGSSTTATTGGALASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKNEREPWLTNTCTCVDRRNSLSKTGTESTSTTSTTSTTITNIPSSESHGGNRTRPKRRRRRPEERKPRGRTGGNEWGRGVISGYAALHLPPMLPPALGLLASDHVFLGNMKQHMLTHKIRDMPSHLFADAKQTGQQQQQQPQQQDHENSRSPMCADESSLPPPAPPPPPMPPSSVEAVVAAAAMPVKRSPPEGDLPAPKRPPSMPSKHLCQVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLTSPHSASAAKYAGLFGSVYGGVAGAGGGAGGGAGGGGIAAGFPVDKQPMAPSNGSLGESKSLSAGSMLFRTPSPSHSPGTPSSNTGNQNSASVPSWGGSDPLQHRFERETSSRTEENSTPPTARLPPTPAPRGEGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00253834;
- 80% Identity
- -