Basic Information

Insect: Trachelus tabidus
Gene Symbol: salm
Assembly: GCA_030142655.1
Location: JARQTI010000734.1:441747-451613[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.1e-06 0.00061 20.5 0.9 1 23 497 519 497 519 0.98

2 9 1.4e-05 0.0012 19.6 2.1 1 23 525 547 525 547 0.98

3 9 0.089 7.6 7.6 3.8 2 23 1008 1029 1007 1029 0.98

4 9 6.1e-08 5.3e-06 27.0 0.6 1 23 1035 1057 1035 1057 0.97

5 9 8.6e-05 0.0074 17.1 2.6 1 23 1067 1089 1067 1089 0.98

6 9 0.003 0.26 12.2 1.9 2 23 1504 1525 1503 1525 0.97

7 9 0.038 3.3 8.8 0.9 1 14 1531 1544 1531 1546 0.92

8 9 1.5e-06 0.00012 22.7 2.1 3 23 1751 1771 1749 1771 0.96

9 9 2.8e-07 2.4e-05 24.9 0.9 1 23 1777 1799 1777 1799 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.1e-06	0.00061	20.5	0.9	1	23	497	519	497	519	0.98
2	9	1.4e-05	0.0012	19.6	2.1	1	23	525	547	525	547	0.98
3	9	0.089	7.6	7.6	3.8	2	23	1008	1029	1007	1029	0.98
4	9	6.1e-08	5.3e-06	27.0	0.6	1	23	1035	1057	1035	1057	0.97
5	9	8.6e-05	0.0074	17.1	2.6	1	23	1067	1089	1067	1089	0.98
6	9	0.003	0.26	12.2	1.9	2	23	1504	1525	1503	1525	0.97
7	9	0.038	3.3	8.8	0.9	1	14	1531	1544	1531	1546	0.92
8	9	1.5e-06	0.00012	22.7	2.1	3	23	1751	1771	1749	1771	0.96
9	9	2.8e-07	2.4e-05	24.9	0.9	1	23	1777	1799	1777	1799	0.98

Sequence Information

Coding Sequence: ATGCAGCTGATGCGATGGAGCATCACACGGCGACTCGAGAGCCGCAGTAACAAGCAGCGTCGCGACATCAAGATCTGTCAGGCTGAACGTACTACTTCGCCTGGGTCCCGTGATATCGCCTACTCTCAGTATTCCGGGGAAGGAATCGAGTCCGGGTCAGACGGAGAAGAAAGTGCTGGAGGAGGCATCGTAGGAGGGGTTGAAGGaagtggcggtggtggtggtgttggTGGCGGTGAAGTAACAGGGGGTCCAGTCGACGAGGCCGTAGACCTTAGACGATCTCATCATGGAGAGGAGGATGAGAGGGATCGAGAGGATTTGCCAATGgacgaggacgaagaggacgaggagggtGTCGAAGATCCAGGGGATcaagacgaggaggaggaaggaacGCGAAAGCAGGTGATGCGACATCGTCAGGATGCGGAGAACAACAACAGTTTTGTCGAAGGTGGACCACCAAGTGGGCTCTTCGGTCCACCTGGAGCAAGTCACGTGACCCTTGAGGCCCTCCAGAATACCAAAGTCGCCGTGGCGCAATTCGCAGCCACCGCGCTAGCTGGTGGTGCCGACAGTGAGGCGGCCCTCCAGGACTTGGCGCTGCTTCAGAGTACTCTCTACACCCTCCAGCATCAGCAGGTCTTCCAGTTGCAATTGATAAGTCAACTGCAGCAACAGCTCTCGATAACGCACGGTCAGCCGACGGTTCCGGGAACTCCAACTGGAACAGGGCTACCGGGTACGGGGGTGACTTCGACGACAACGACAAGTACGACAACAAGCACTAGTCATCCAGGTACTCCGTTCGGCAATGTCGGAGGTGCGGGTAGCGCTATCGGTAGTGGTACCAGTGCTGGCATTGGAGGTGGTATTGCACGTGTCGGTAGCGGTATGGGAGGTACTGCTTGTGTTGATACTCGTGACACATCGTCGTCAACAGACAACAAGGAAGCATCACCCTCGCCAACGATTCACCCGAAGCCTCTCTCGGCCCTGACTTCGCCGCCGTCCTCCCGGCCACCGAGCCATCATCGACAGTCATCGCCGGGACTACTCCAGTCACAGAGTCAAGAACGAGGCACTCCCTCAGCGAGTGGTGCTGGTAGTGGTGGCAGTACATCGCCATTGAGTCTACCGCTGCCGCTGTCGCTCTCGCTTCCGTCGTCGGCAGCAGCGGCAGCGGCGGCGGCCGCTGCAGCCGCAGCAAGTCAAATGTCCCTCTCCCACCAAATGCCGCCTCTCTGCTCGATAAGCTCCTCACTGGCCTCGTCGATCATCACAAACACGGACCCGCCGCCCCTTCACGAGCCCAACACCCTGGAGATGCTACAGAAACGAGCGCAGGAGGTGCTCGACAATGCGAGTCAGGGCCTCCTGGCGAACAATCTAGCAGATGAGCTCGCGTTCAGGGGCGGCAAGGGCTCACGACTGTCACCCTACGATTCGAAGTCCTCCGGTGGGCGCGGCGAGCCCTTCTTCAAGCACCGCTGTCGCTACTGCGGCAAGGTCTTTGGCAGTGATTCGGCGCTCCAGATTCACATCCGGTCCCATACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGAAGCCGATTCACCACCAAGGGAAACCTCAAGGTCCACTTCCAGAGGCACACGGCCAAGTTTCCACACGTTAAGATGAATCCGAATCCCGTGCCCGAGCACCTTGACAAGTACCATCCCCCCCTTCTCCAGCAGCTCGCGGCTTCCGGGCAAAGGCCCTTACCGTCcccgccaccgccaccgccgccgccgccgccccCGCCACCGCCAGcgtcgtcctcctcctcctcgtcgtcgtcgccatCATCGTCGTCGCATCATCCGTCGTTGTGTCACCCTGGCtccgcagcagcagcagcagccgcgGCCGCCGCCGCAGCGGCTCATGGTTTCCTTCCCCCTCAGCCACCGTTACCTCTTGCTCTAACCCTCCCTGTAATGCCACCCCTTTACCGATCACCCCTCCTTAATCACAGGGAGGAACAAGAGGTTCCGGAGAATCTCAGCAAGACCACTGTCCCGTCTCCTCACACATCGCCTCCTGTTCCAACGGGACACCATCATCTCCCTTTACCCAGTTCCCATCATCCTCACCTCCACCATCAATCGAACTCGCATCATTCCTCCTTTCACGAGCATCATCAGATGAAACAGCAGCAGCACCTGCATCATCATCACGCTCAACAACAACATCATATCCATCATCACGAGCAGACTACCTCGATAGCATCCTCGGCCGCGCAAAGAGACGAGATTAAACTAGAACACCAATCACCTACTCAAGACTCCTACCAACAACAATCACGACCAACGAGTCGAGAAGATTCCGAAAGGATAACGCCGAAGCGAGAACCAGAGGATACCGAGGAGCAACCCGAGGACGAAATAGAGGAGTACGAGGATAGTACTCGAAGATACCTGAACAACTCGTCACCATCCTCGACGGCGAATCCTCCGTCACAACCACAACCTTACGAGGATTGTAGTATGGACAGTAGTAAGATGAGTGCCCGACTAGAGGCCGAAAATGAAATGGACGGGGACGGGGATGAAGAGATGGAAGAGCAGCCAGAGAACCTCTCAGGTCGCGGTACTTCGAGTAGACTTGGTCATCAGAGTCTCGGCTATCCTGGTGCCTCTCCCGCAAGCAGTAGTGCCAGTAGCAGTAGCCTCCAAACGACCTTCGCGGGAATTTTATTTCCCACGGGGCCACCACTACCGCCAGTGACTTCGTCCTCCGCCTCGACGATTCATCATCCTCAGCTGATTCACCACGTCTCTTCCAGTGGTGGCGGCACTACTCCCACCGCACCTGGATGTGAAATGATCGTCGATCCTGCCCGTGATCCTGCCATATACTCGAGCCTACTTCCACGGCCGGGGAGCAATGACAACTCCTGGGAGAGTCTTATCGAAATTACCAAAACCTCAGAGACGTCGAAGCTTCAGCAGCTCGTTGACAACATCGAGCACAAGTTGACGGATCCTAACCAGTGCGTCATCTGTCACAGGGTACTCTCCTGTAAGAGTGCACTCCAGATGCACTATCGTACTCATACGGGCGAACGGCCATTTAAGTGCAAAATATGTGGCAGAGCCTTCACCACCAAAGGCAACCTTAAGACTCACATGGGGGTGCATCGAGCGAAACCGCCTCTCAGGGTGCTTCATCAATGTCCGGTATGTcacaaaaaattcacaaacgCCCTGGTACTTCAGCAGCACATACGACTTCATACGGGCGAACCTACGGATCTCAGTCCGGAACAGATTCAGGCGGCTGAAGTTAATGAATTTCCACCTGGTTACCCACATCATCCTCTGGCGTCGTTTCTCCCCCAGGGTTTCCCGGCGCTTCATCCTGCAGGGAGTGGGTTCCCCTTGGGGTTCCCAGGTTCTCGCCAGCACATAGCCGAAAGAACTCCTCATGAGAATGACCTCGACTCGAAGGACTCTCGAGATCATCTGCATCATCCGCTTCTTCCCTCTCATCATCATCTCTCGCACCAACAGAATGCTCAGCATCACTTGCAACTGCATCAACAACACCAAAAGTACTCAGAAGAGCGGAGCTCTACAGCAGGTGATGACGAAATGGCTGAAgatcaagaagaagaggatgacATCACTCGAGAAGATGATGAGAGGTGCGATGAACGGGAGAGGCGAAGCATGGAAGAGGCTGAAAATGATCCGGAGAGAGATGAAAACGAAGAGgagcatcatcatcatcttcatcatcatcaccatcaacaacagcaacaacggCTGTCGCTACCAAGCTTTTCGACGTCTCTGGCAGCCCTCGAGAATCAGGTGCGAACGATCACGACGACAGTGGCTGGTGGTAGCTCCAGGTCACCTGGACCCCATCGATATAACGGAAGTGAAAAGAGCACCAGTCCCCCGGCGATACGAAATGGAAGCGGCGGTGTTCCGCTTGACCTGACCCCACGCTCTTCCTCGACCCCGGTGGGTGGCTCGACGCCTACCCCGACGCCGCCGTCCCCACCGACAGCAGGAGCATCCTTGGCATCGCCATCCGCCTCGTCACAGAGCACAGCGCATCACGCGCATGCTTTCGGAATGTTCGCAGGCCTTCTTAGGGCGGTCTCATCGCCACCGTCGAGTCTCGGTGGTGGCGGCGCCAGCGGCATTGGCGGTAGCAGCATCAGCACTCCCAGCGTATCCGGTACAACGTTAAACAGCGTAGTCTCGATGACCGCTGGGAATCCAGTCCTCGGCGAAGGCGTCGGTAGCGTCGTTGGTGTCAGTGGCGTCGGCGGTGTCGGTGGCAGTAGCGGCGGCGGGGGCGGTAGCGGTGGTGGCGGAAGTGGCGGTGAAGGTGCAGGTAGCAGCACTACCGCCACCACCGGAGGAGCACTTGCCTCTCTAACGACGTCAGCCGTTCTCGCTGCCACTTCTACCTACAATCCCCTCGGCCTGGCTGTCGGAGGGCCAGCAGTCCGCGGTAACACGACATGCAATATCTGTTACAAGACGTTCGCTTGTAACTCGGCCTTGGAGATTCACTACCGGAGCCACACGAAGGAACGACCGTTCAAGTGCACCATTTGCGACCGGGGCTTTTCCACGAAGAATGAACGCGAACCCTGGTTGACGAATACGTGTACCTGTGTCGATCGGAGGAACTCCCTATCCAAGACCGGCACCGAGTCCACTAGCACCACTAGCACGACTAGCACCACTATCACCAACATCCCTTCGTCCGAGTCGCATGGCGGCAATCGGACGAGGCCGAAACGCAGGCGGCGACGTCCTGAGGAGAGGAAGCCCCGGGGGCGGACTGGTGGCAACGAATGGGGGCGGGGAGTGATCTCTGGCTACGCTGCTCTCCACCTGCCCCCGATGCTGCCTCCCGCCCTCGGACTTCTCGCCTCGGACCACGTCTTCCTGGGAAACATGAAGCAGCACATGCTCACACACAAGATCCGGGACATGCCACCTCACCTCTTTGCCGACGCGAAACAGACGggtcagcagcagcaacaaccaCAGCAGCAGGATCATGAGAACTCGAGGAGTCCCATGTGTGCGGATGAGTCGAGTCTACCACCTCCAgcacctccaccaccaccgaTGCCACCGTCGTCCGTAGAAGCTGTAGTAGCAGCCGCGGCGATGCCTGTCAAGAGATCACCACCCGAGGGTGATTTACCTGCGCCCAAAAGGCCGCCCAGCATGCCCAGCAAGCACTTGTGCCAGGTTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACACATACGGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAACCTCAAGGTGCACATGGGAACGCATATGTGGACGAACGGAGCGTCGCGGCGAGGTCGCCGAATGTCATTGGATCTACCGCCACTGCCCATCACACCCAAGGACTCGGAGTTTCTACAACGACGACCGGATCTCTTTTATCCTTATCTACCCGCGCCGTTCCTTAATGGCGTTCAGCAAAAACTGAACGAGATCTCGGTCATACAAAGTAACAATGGACTAACATCGCCACATAGCGCAAGTGCAGCCAAGTACGCTGGTCTCTTTGGATCAGTTTATGGAGGCGTCGCTGGTGGCGGTGCTGGCGGTGGCGCCGGAGGTGGTGGTATCGCTGCGGGATTCCCTGTTGACAAGCAGCCGATGGCACCGAGTAATGGCTCACTAGGAGAATCAAAATCCCTATCAGCAGGGTCCATGCTCTTCCGCACACCATCTCCATCTCATTCACCTGGCACTCCATCATCGAACACCGGCAATCAGAATTCCGCCAGTGTACCATCCTGGGGAGGTAGCGACCCGCTGCAACACAGATTCGAGCGTGAAACTTCGTCCAGGACGGAGGAGAACGCGACTCCGCCAACGGCAAGACTACCACCTACACCGGCGCCAAGAGGCGAAGGTCTGGCAGCCTAG
Protein Sequence: MQLMRWSITRRLESRSNKQRRDIKICQAERTTSPGSRDIAYSQYSGEGIESGSDGEESAGGGIVGGVEGSGGGGGVGGGEVTGGPVDEAVDLRRSHHGEEDERDREDLPMDEDEEDEEGVEDPGDQDEEEEGTRKQVMRHRQDAENNNSFVEGGPPSGLFGPPGASHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHGQPTVPGTPTGTGLPGTGVTSTTTTSTTTSTSHPGTPFGNVGGAGSAIGSGTSAGIGGGIARVGSGMGGTACVDTRDTSSSTDNKEASPSPTIHPKPLSALTSPPSSRPPSHHRQSSPGLLQSQSQERGTPSASGAGSGGSTSPLSLPLPLSLSLPSSAAAAAAAAAAAAASQMSLSHQMPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSSGGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQLAASGQRPLPSPPPPPPPPPPPPPPASSSSSSSSSPSSSSHHPSLCHPGSAAAAAAAAAAAAAHGFLPPQPPLPLALTLPVMPPLYRSPLLNHREEQEVPENLSKTTVPSPHTSPPVPTGHHHLPLPSSHHPHLHHQSNSHHSSFHEHHQMKQQQHLHHHHAQQQHHIHHHEQTTSIASSAAQRDEIKLEHQSPTQDSYQQQSRPTSREDSERITPKREPEDTEEQPEDEIEEYEDSTRRYLNNSSPSSTANPPSQPQPYEDCSMDSSKMSARLEAENEMDGDGDEEMEEQPENLSGRGTSSRLGHQSLGYPGASPASSSASSSSLQTTFAGILFPTGPPLPPVTSSSASTIHHPQLIHHVSSSGGGTTPTAPGCEMIVDPARDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYPHHPLASFLPQGFPALHPAGSGFPLGFPGSRQHIAERTPHENDLDSKDSRDHLHHPLLPSHHHLSHQQNAQHHLQLHQQHQKYSEERSSTAGDDEMAEDQEEEDDITREDDERCDERERRSMEEAENDPERDENEEEHHHHLHHHHHQQQQQRLSLPSFSTSLAALENQVRTITTTVAGGSSRSPGPHRYNGSEKSTSPPAIRNGSGGVPLDLTPRSSSTPVGGSTPTPTPPSPPTAGASLASPSASSQSTAHHAHAFGMFAGLLRAVSSPPSSLGGGGASGIGGSSISTPSVSGTTLNSVVSMTAGNPVLGEGVGSVVGVSGVGGVGGSSGGGGGSGGGGSGGEGAGSSTTATTGGALASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKNEREPWLTNTCTCVDRRNSLSKTGTESTSTTSTTSTTITNIPSSESHGGNRTRPKRRRRRPEERKPRGRTGGNEWGRGVISGYAALHLPPMLPPALGLLASDHVFLGNMKQHMLTHKIRDMPPHLFADAKQTGQQQQQPQQQDHENSRSPMCADESSLPPPAPPPPPMPPSSVEAVVAAAAMPVKRSPPEGDLPAPKRPPSMPSKHLCQVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLTSPHSASAAKYAGLFGSVYGGVAGGGAGGGAGGGGIAAGFPVDKQPMAPSNGSLGESKSLSAGSMLFRTPSPSHSPGTPSSNTGNQNSASVPSWGGSDPLQHRFERETSSRTEENATPPTARLPPTPAPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00298578;
90% Identity: iTF_00253834;
80% Identity: -