Basic Information

Insect: Pachycephus smyrnensis
Gene Symbol: salm
Assembly: GCA_030142225.1
Location: JARQST010000582.1:359479-369449[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7e-06 0.00051 20.5 0.9 1 23 495 517 495 517 0.98

2 9 1.4e-05 0.001 19.6 2.1 1 23 523 545 523 545 0.98

3 9 0.087 6.4 7.6 3.8 2 23 1008 1029 1007 1029 0.98

4 9 6e-08 4.4e-06 27.0 0.6 1 23 1035 1057 1035 1057 0.97

5 9 8.4e-05 0.0062 17.1 2.6 1 23 1067 1089 1067 1089 0.98

6 9 0.0029 0.21 12.3 1.9 2 23 1484 1505 1483 1505 0.97

7 9 0.044 3.2 8.6 0.8 1 14 1511 1524 1511 1526 0.92

8 9 1.4e-06 0.0001 22.7 2.1 3 23 1727 1747 1725 1747 0.96

9 9 2.8e-07 2e-05 24.9 0.9 1 23 1753 1775 1753 1775 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7e-06	0.00051	20.5	0.9	1	23	495	517	495	517	0.98
2	9	1.4e-05	0.001	19.6	2.1	1	23	523	545	523	545	0.98
3	9	0.087	6.4	7.6	3.8	2	23	1008	1029	1007	1029	0.98
4	9	6e-08	4.4e-06	27.0	0.6	1	23	1035	1057	1035	1057	0.97
5	9	8.4e-05	0.0062	17.1	2.6	1	23	1067	1089	1067	1089	0.98
6	9	0.0029	0.21	12.3	1.9	2	23	1484	1505	1483	1505	0.97
7	9	0.044	3.2	8.6	0.8	1	14	1511	1524	1511	1526	0.92
8	9	1.4e-06	0.0001	22.7	2.1	3	23	1727	1747	1725	1747	0.96
9	9	2.8e-07	2e-05	24.9	0.9	1	23	1753	1775	1753	1775	0.98

Sequence Information

Coding Sequence: ATGCAGCTGATGCGATGGAGCATCACACGGCGACTCGAGAGCCGCAGTAACaagcagcgtcgcgacgtcaagATCTGTCAGGCTGACCGTACTACTTCGCCTGGGTCCCGTGATATCGCCTACTCTCAGTATTCCGGGGAAGGAATCGAGTCCGGGTCAGACGGAGAAGAAAGTGCTGGAGGAGGCATCGTAGGAGGGGTAGAAGGAagtggcggtggcggtggtgtTGGTGGCGGTGAAGTAACAGGGGGTCCAGTCGACGAGGCCGTAGACCTTAGGCGATCTCATCATGGAGAGGAGGATGAGAGGGATCGAGAGGATTTGCCAATggacgaggacgaagaggacgaggagggtGTCGAAGATCCAGGGGAtcaggacgaggaggaggaaggaacgCGAAAGCAGGTGATGCGACATCGTCAGGATGCGGAGAACAACAACAGCTTTGTCGAAGGTGGACCACCAGGTGGGATCTTCGGTCCAGCTGGGGCTAGTCACGTGACCCTTGAGGCCCTCCAGAATACGAAAGTCGCCGTGGCGCAATTCGCAGCCACAGCACTAGCTGGAGGTGCCGATAGCGAGGCTGCCCTCCAGGATTTGGCGCTGCTTCAAAGTACCCTCTACACCCTCCAGCATCAGCAGGTCTTCCAGCTGCAATTGATAAGTCAACTGCAGCAACAACTCTCGATAACGCATGGTCAGCCGACGGTTCCAGGAGCCCCAACTGGAACAGGGCTACCGGGTACGGGGGTGACTTCGACGACAACGACAAGTACGACAACAAGCACTAGTCATCCAGGTACTCCGTTCGGCAATGTCGTAGGTGCGGGTAATGCTGTCGGCAGTGGTACCAGTGCTGCTATTGGAGGTGGTATTGCACGTGTCGGTAGCGGTATGGGAGGTACTGCTTGTGTTGATACTCGTGACACGTCGTCGTCAACAGACAACAAGGAAGCATCACCCTCGCCAACGATTCACCCGAAGCCTCTCTCGGCCCTGACCTCGCCGCCGTCCTCCCGGCCACCGAGCCATCATCGACAGTCATCGCCGGGACTACTCCAGTCACAGACTCAAGAACGAGGCACTCCCTCAGCAGGTGGTGCTGGTAGCGGTGGCACCACATCGCCGTTGAGTTTACCGCTGCCGTTGTCGCTCTCGCTTCCGTCgtcggcggcggcggcggcggctgCTGCAGCCGCAGCAAGTCAAATGTCCCTCTCCCACCAAATGCCGCCTCTCTGCTCGATAAGCTCCTCACTGGCCTCGTCGATCATCACGAACACGGACCCGCCGCCCCTCCACGAGCCCAACACCCTCGAGATGCTACAGAAACGAGCGCAGGAGGTGCTCGACAATGCGAGTCAGGGCCTCCTGGCGAACAATCTAGCCGATGAGCTCGCGTTTAGGGGCGGCAAGGGCTCACGACTATCACCCTACGATTCGAAGTCCTCCGGTGGCCGCGGCGAGCCCTTCTTCAAGCACCGCTGTCGCTACTGCGGCAAGGTCTTTGGCAGCGACTCGGCGCTCCAGATTCACATCCGGTCCCATACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGAAGCCGATTCACCACCAAAGGAAACCTCAAGGTCCACTTCCAGAGGCACACGGCCAAGTTTCCACACGTTAAGATGAATCCGAATCCCGTGCCCGAGCACCTTGACAAGTACCATCCCCCCCTTCTCCAGCAGCTCGCGGCTTCCGGGCAAAGGCCCTTACCGTCcccgccaccgccaccgccgccgccgccgccccCGCCACCGCCAGcgtcgtcctcctcctcctcgtcgtcgtcgccatcgtcgtcgtcgcatCATCCGTCGTTGTGTCACCCTGGCTCCGCAgccgcagcagcagcagcagccgcgGCCGCCGCCGCAGCGGCTCATGGTTTCCTTCCCCCTCAGCCACCGTTACCTCTTGGTCTAACCCTCCCTGGAATGCCACCCCTTTACCGATCACCCCTCCTTAATCACAGGGAGGAACAAGAGGTTCCAGAGAATCTCAGTAAGACCACCGTCCCGTCTCCTCATGGATCGCCTCCTGTTTCAACGGGACATCATCATCTCCCTTTACCTAGTTCCCATCATCCTCACCTCCACCATCAATCGAACTCGCATCATTCCTCCTTTCACGAGCATCATCAGCTGAAACAACAACAGCACCtccatcaccatcatcacGCTCAACAGCTTAATCTCCATCATCACGAGCAGACTACCTCGATAGCACCCTCGGCCGCGCAAAGGGACGAGATTAAACTAGAACACCAATCACCTACTCAAGACTCCTACCACCAACAATCACGACCAACGAGTCGAGAAGATTCCGAGAGGATAACGCCGAAGCGAGAACCAGAGGATACTGAGGAGCAACCTGAGGACGAAACAGAGGAGTACGAGGACAGTACTCGAAGATACCTAAACAACTCGTCACCATCCTCGACGGCGAATCCTCCATCACAGCCACAACCTTATGAGGATTGTAGTATGGACAGTAGTAAGATGAGTGCCCGACTAGAGGCCGAAAACGAAATAGACGGGGACGGGGACGAGGAGATGGAGGAACAGCCAGAGAACCTCTCAGGTCGTGGTACTTCGAGTAGACTTGGCCACCAGAGTCTCGGATATCCTGGTGCCTCTCCCGCAAGCAGTAGTGCCAGTAGCAGTAGCCTCCAAACAACCTTCGCGGGAATTTTATTTCCCACGGGgccaccactaccaccagtGACTTCGTCCTCGGCCTCGACGATCCATCATCCTCAGCTAGTTCACCACGTCTCGTCCAGTGGTGGTGGCACTACTCCCACCGCACTTGGATGTGAAATGATCGTCGATCCTGCCCGTGATCCTGCCATATACTCGAGCCTACTACCCCGACCGGGAAGCAACGACAACTCCTGGGAAAGTCTTATCGAAATCACCAAAACCTCAGAGACGTCAAAGCTCCAGCAGCTCGTTGACAACATCGAGCACAAGTTAACGGATCCTAACCAGTGCGTCATCTGCCACAGGGTACTCTCCTGTAAGAGTGCACTCCAGATGCACTATCGTACTCATACAGGCGAACGGCCATTCAAGTGCAAAATATGTGGCAGAGCCTTCACCACCAAAGGCAACCTAAAGACTCACATGGGAGTGCATCGAGCGAAACCACCCCTCAGAGTGCTTCATCAGTGTCCAGTATGTCACAAGAAATTCACAAACGCCCTGGTACTTCAGCAGCACATACGACTTCATACGGGTGAACCTACGGATCTCAGTCCGGAACAGATTCAGGCGGCTGAAGTTAACGAGTTTCCACCTGGTTATCCACATCATCCTCTGGCGTCGTTTTTACCTCAAGGATTCCCGTCGCTTCATCCTGCAGGGACTGGGTTCGCCTTGGGGTTCCCAGGTTCTCGTCAGCACATAGCCGAAAGAAGTCCTCACGAGAACGACCTCGACTCAAAGGACTCTCGAGAacatcttcatcatcatccgCTTCTTCCCTCCCATCATCCTCATCTCTCGCACCAGCAGAATGCTCAGCATCATCTGCAACAgcatcaacaacaacaaaagtaTTCAGAGGAGCGGAGCTCGACCGCAGGTGATGACGAAATGGCTGAAGATCAAGACGAAGAGGATGACATCACTCGAGAGGATGATGAGAGGTGTGATGAACGGGAGAGGCGAAGTATGGAAGATGCCGAAAACGATCAGGAGAGAGATGAGAACgaggagcagcagcagcagcatcatcatcatcatcatcaacaacaacaacaacaacgtcTGTCACTACCAAGTTTCTCGACGTCCCTGGCGGCCCTCGAGAATCAGGTGCGAACGATCACGACGACAGTAGCTGCTGGTAGCTCCAGGTCACCTGGACCCCATCGATATAACGGAAGTGAAAAGAGCACCAGTCCCCCGGCAATAGGGAATGGAAGCGGCGGTGTTCCGCTTGACCTGACCCCACGCTCTTCCTCGACCCCGGTGGGTGGCTCAACGCCTACCCCGACGCCGCCGTCCCCACCGACAGCAGGAGCATCCTTAACATCGCCATCCGCCTCGTCACAGAGCACAGCGCATCACGCGCATGCTTTCGGAATGTTCGCAGGCCTTCTTAGGGCGGTCTCATCGCCACCGTCGAGTCTCGGTGGTGGCGGCGCCAGCGTCATTGGCGGTAGCAGCACCAGCACTCCCAGCGTATCCGGTACAACGTTAAACAGCGTAGTCTCGATGAACGCTGGCAATCCAGTCGTCGGCGAAGGCGTCGGTAGCGTCGTTGGTGTCAGTGGCGTCGGCGGTGTCGGTGGCAGTAGCGGCGGCGGGGGCGCACTTGCCTCTCTAACGACGTCGGCCGTTCTCGCTGCCACTTCTACCTACAATCCCCTCGGCCTGGCTGTCGGAGGGCCAGCAGTCCGCGGTAACACGACATGCAATATCTGTTACAAGACGTTCGCTTGTAACTCTGCCCTGGAGATTCACTACCGGAGCCACACGAAGGAGCGACCGTTCAAGTGCAGCATTTGCGACCGGGGCTTTTCCACGAAGAATGAACGCGAACCCTGGTTGACGAATACGTGTACCTGTGTCGATCGGAGGAACTCCCTATCCAAGACCGGCACCGAGTCCACTAGCACCACTAGCACGACTAGCACCACTATCACCAACATCCCTTCGTCCGAGTCGCATGGCGGCAATCGGACGAGGCCGAAACGCAGGCGGCGACGTCCTGAGGAGAGGAAGCCCCGGGGGCGGACTGGTGGCAACGAATGGGGGCGGGGAGTGATCTCTGGCTACGCTGCTCTCCACCTGCCCCCGATGCTGCCTCCCGCCCTCGGACTTCTCGCCTCGGACCACGTCTTCCTGGGAAACATGAAGCAGCACATGCTCACACACAAGATCCGGGACATGCCACCTCACCTCTTCGCCGACGCGAAACAGACAGgtcagcaacagcagcaggaTCATGAGAACTCGAGAAGTCCTATGTGTGCGGATGAGTCGAGTCTACCACCTCCagcacctccaccaccaccaatgCCACCATCGTCCGTAGAAGCTGTAGTAGCAGCCGCGGCGATGCCTGTCAAGAGATCACCACCCGAGGGTGATTTACCTGCGCCGAAGAGGCCGCCCAGCATGCCCAGCAAGCACTTGTGCCAGGTTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACACATACAGGCGACAAACCGTTTCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAACCTCAAGGTACACATGGGAACGCATATGTGGACGAacggggcgtcgcgacgaggTCGCCGAATGTCATTGGATCTACCGCCACTTCCCATCACACCCAAAGACTCGGAGTTTCTTCAACGACGACCGGATCTCTTTTATCCTTATCTGCCCGCGCCGTTCCTTAATGGCGTCCAGCAAAAACTGAACGAGATCTCGGTCATACAAAGTAACAATGGGCTAACATCGCCACATAGCGCAAGTGCAGCCAAGTACGCCGGTCTCTTTGGATCAGTCTACGGAGGTGTCGctggtggcggtggcggtgcTGGTGGTGGCGCCGGAGGTGGCGGTATCGCTGCGGGATTTCCTGTTGACAAGCAACCGATGGCACCGAGTAATGGCTCCCTAGGAGAATCAAAATCCCTGTCAGCAGGGTCCATGCTTTTCCGCACACCATCTCCATCTCATTCACCCGGCACTCCATCGTCGAACACCGGCAATCAGAATTCTGCCAGTGTACCATCCTGGGGAGGTAGCGATCCTCTGCAACACAGATTCGAGCGTGAAACTTCGTCCAGGACGGAGGAGAACGCGACGCCGCCAACGGCCAGACTACCACCTACACCGGCGCCAAGAGGAGAAGGTCTGGCCGCCTAG
Protein Sequence: MQLMRWSITRRLESRSNKQRRDVKICQADRTTSPGSRDIAYSQYSGEGIESGSDGEESAGGGIVGGVEGSGGGGGVGGGEVTGGPVDEAVDLRRSHHGEEDERDREDLPMDEDEEDEEGVEDPGDQDEEEEGTRKQVMRHRQDAENNNSFVEGGPPGGIFGPAGASHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHGQPTVPGAPTGTGLPGTGVTSTTTTSTTTSTSHPGTPFGNVVGAGNAVGSGTSAAIGGGIARVGSGMGGTACVDTRDTSSSTDNKEASPSPTIHPKPLSALTSPPSSRPPSHHRQSSPGLLQSQTQERGTPSAGGAGSGGTTSPLSLPLPLSLSLPSSAAAAAAAAAAASQMSLSHQMPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSSGGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQLAASGQRPLPSPPPPPPPPPPPPPPASSSSSSSSSPSSSSHHPSLCHPGSAAAAAAAAAAAAAAAHGFLPPQPPLPLGLTLPGMPPLYRSPLLNHREEQEVPENLSKTTVPSPHGSPPVSTGHHHLPLPSSHHPHLHHQSNSHHSSFHEHHQLKQQQHLHHHHHAQQLNLHHHEQTTSIAPSAAQRDEIKLEHQSPTQDSYHQQSRPTSREDSERITPKREPEDTEEQPEDETEEYEDSTRRYLNNSSPSSTANPPSQPQPYEDCSMDSSKMSARLEAENEIDGDGDEEMEEQPENLSGRGTSSRLGHQSLGYPGASPASSSASSSSLQTTFAGILFPTGPPLPPVTSSSASTIHHPQLVHHVSSSGGGTTPTALGCEMIVDPARDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYPHHPLASFLPQGFPSLHPAGTGFALGFPGSRQHIAERSPHENDLDSKDSREHLHHHPLLPSHHPHLSHQQNAQHHLQQHQQQQKYSEERSSTAGDDEMAEDQDEEDDITREDDERCDERERRSMEDAENDQERDENEEQQQQHHHHHHQQQQQQRLSLPSFSTSLAALENQVRTITTTVAAGSSRSPGPHRYNGSEKSTSPPAIGNGSGGVPLDLTPRSSSTPVGGSTPTPTPPSPPTAGASLTSPSASSQSTAHHAHAFGMFAGLLRAVSSPPSSLGGGGASVIGGSSTSTPSVSGTTLNSVVSMNAGNPVVGEGVGSVVGVSGVGGVGGSSGGGGALASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKNEREPWLTNTCTCVDRRNSLSKTGTESTSTTSTTSTTITNIPSSESHGGNRTRPKRRRRRPEERKPRGRTGGNEWGRGVISGYAALHLPPMLPPALGLLASDHVFLGNMKQHMLTHKIRDMPPHLFADAKQTGQQQQQDHENSRSPMCADESSLPPPAPPPPPMPPSSVEAVVAAAAMPVKRSPPEGDLPAPKRPPSMPSKHLCQVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLTSPHSASAAKYAGLFGSVYGGVAGGGGGAGGGAGGGGIAAGFPVDKQPMAPSNGSLGESKSLSAGSMLFRTPSPSHSPGTPSSNTGNQNSASVPSWGGSDPLQHRFERETSSRTEENATPPTARLPPTPAPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00298578;
90% Identity: iTF_00253834;
80% Identity: -