Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.9e-18 5.9e-15 54.0 0.0 1 43 28 71 28 73 0.95

2 3 0.66 7.9e+02 -0.8 0.9 6 15 153 162 150 165 0.86

3 3 3.6 4.4e+03 -3.2 0.1 3 11 192 200 192 200 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.9e-18	5.9e-15	54.0	0.0	1	43	28	71	28	73	0.95
2	3	0.66	7.9e+02	-0.8	0.9	6	15	153	162	150	165	0.86
3	3	3.6	4.4e+03	-3.2	0.1	3	11	192	200	192	200	0.82

Coding Sequence: ATGTGGCAAAAGTGTTGGAACACCAATCAGAGCCTGGTGCACAATCTGCGCTTCCGGGAACGCGGACCGCTCAAGTCTTGGCGACCGGAAACCATGGCCGAGGCAATCTTCAGCGTTCTCAAGGAAGGACTGTCGCTCAGCCAAGCAGCAAGGAAGTACGACATACCGTACCCAACGTTTGTCCTTTACGCGAATCGAGTTCACAACATGTTAGGTCCAAGCGCCGATGGCGGGGCCGGTGAGTATCTGCGTCCCAAGGGCCGAGGGCGACCTCAGCGAATACTCCTCGGGGTCTGGCCGGACGAGCACATCCGGGGTGTCATAAGGGCGGTTGTGTTTCGCGACGGACACTCGCCGCACATCGTCAAGGAGGAGCCAGCATCCATGTATCCCAGTCTTGCGAATTACGCAGCCTGCAATGGACCGGAAGGTGCGGTGAGTCCCGGCACGGCAGCGGCAGCCGCGGTCGCAGCAGTGGCCCAAGGCCTCCGACATCAGATGTGCAGCATGGTGGCCGCAGCTCATTCCCACCAGCACGACATGATCGGTACGAATCTCTCCAGCAGCCTCTCGACGAACATCCAGGCGGCGATCCAGGCCCAGCATCAtcacaacaacaacaacaacaacaacaataacaacgGCAACTCGCCGCTGAATTTGGGCCTGGCGAGTCCCGGCTCAGGTGGTCCGCCCGAGAGTCCCATGGAGAGTCCCCTGGCCAGTCCTCTGGGTCCTCTGATGGATCCCACCACGCACATACCCAGCAGCGTGGAGGTCGGGATCGGAGTCAGCGGGATGACCTACAAGCCGGCGCGCAGCTTCGTCAGTCCCAGACCGGAGAATCTCTTCCAGGAGGACATCGCCGACCTCGTCAAGAGTTCTCACGGCCTCAAGGACAAGGACAAGATACCTGTGAAGTTGGAACCGCTGACGGACTCGCGTTGCGAATAG
Protein Sequence: MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPASMYPSLANYAACNGPEGAVSPGTAAAAAVAAVAQGLRHQMCSMVAAAHSHQHDMIGTNLSSSLSTNIQAAIQAQHHHNNNNNNNNNNGNSPLNLGLASPGSGGPPESPMESPLASPLGPLMDPTTHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSSHGLKDKDKIPVKLEPLTDSRCE

Sequence clustering based on sequence similarity using MMseqs2