Ttab003477.1
Basic Information
- Insect
- Trachelus tabidus
- Gene Symbol
- bab1
- Assembly
- GCA_030142655.1
- Location
- JARQTI010000354.1:102521-104592[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.7e-18 1.3e-14 54.0 0.0 1 43 28 71 28 73 0.95 2 3 1.2 1.7e+03 -0.8 0.9 6 15 153 162 150 165 0.86 3 3 6.5 9.6e+03 -3.2 0.1 3 11 192 200 192 200 0.82
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGTTGGAACACCAATCAGAGCCTGGTGCACAATCTGCGCTTCCGGGAACGCGGACCGCTCAAGTCTTGGCGACCGGAAACCATGGCCGAGGCAATCTTCAGCGTTCTCAAGGAAGGACTTTCGCTCAGCCAAGCAGCAAGGAAATACGACATACCGTACCCAACGTTTGTCCTTTACGCGAATCGAGTTCACAACATGTTAGGTCCAAGCGCCGATGGCGGGGCCGGTGAGTATCTACGTCCCAAGGGCCGAGGGCGACCTCAGCGAATACTCCTTGGGGTCTGGCCGGACGAGCACATCCGCGGTGTCATAAGGGCGGTTGTATTTCGCGACGGACACTCGCCCCACATCGTCAAGGAGGAGCCAGCATCCATGTATCCCAGTCTTGCGAATTACGCAGCCTGCAATGGACCGGAAGGTGCGGTGAGTCCCGGCACGGCAGCGGCAGCCGCGGTCGCAGCAGTGGCCCAAGGCCTCCGACATCAGATGTGCAGCATGGTGGCTGCAGCTCATTCCCACCAGCACGACATGATCGGTACGAATCTCTCCAGCAGCCTCTCGACGAACATCCAGGCGGCGATTCAGGCCCAGCATCatcacaacaacaacaacaataataataacaatggcaACTCGCCGCTGAATTTGGGTCTGGCGAGTCCCGGCTCAGGTGGTCCGCCCGAGAGTCCCATGGAGAGTCCCCTGGCCAGTCCTCTGGGTCCTCTGATGGATCCAACCACGCACATACCGAGCAGCGTGGAGGTCGGGATCGGTGTCAGCGGGATGACCTACAAGCCGGCGCGCAGCTTCGTCAGTCCCAGACCAGAGAATCTCTTCCAGGAGGACATCGCCGACCTCGTAAAGAGTTCCCACGGCCTCAAGGACAAGGACAAGATACCTGTGAAGTTGGAGCCGCTGACGGACTCGCGTTGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPASMYPSLANYAACNGPEGAVSPGTAAAAAVAAVAQGLRHQMCSMVAAAHSHQHDMIGTNLSSSLSTNIQAAIQAQHHHNNNNNNNNNGNSPLNLGLASPGSGGPPESPMESPLASPLGPLMDPTTHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSSHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00296689; iTF_00295160; iTF_00297464; iTF_00292857; iTF_00293635; iTF_01475365; iTF_00294384; iTF_00295926; iTF_00291451; iTF_00292200; iTF_01473095; iTF_00159020; iTF_01537765; iTF_00298225;
- 90% Identity
- iTF_00253480;
- 80% Identity
- iTF_00296689; iTF_00295160; iTF_00297464; iTF_00292857;