Apag005875.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- bab1_1
- Assembly
- GCA_963969455.1
- Location
- OZ018310.1:468606-471897[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-17 1.1e-14 53.9 0.0 1 43 49 92 49 94 0.95 2 3 3 2.4e+03 -1.7 1.4 6 15 174 183 172 186 0.88 3 3 9.6 7.7e+03 -3.3 0.1 3 11 213 221 213 221 0.82
Sequence Information
- Coding Sequence
- ATGGATTGTTCTCCGTTTCGGGGGGGTGTTACAGCAGACAGCTACCAGTACCAGCTCCAGTCGATGTGGCAGAAGTGCTGGAACACCAATCAGAGCCTCGTCCATAATCTTCGGTTCCGGGAACGAGGACCCCTCAAATCGTGGAGGCCGGAAACGATGGCGGAAGCAATTTTCAGCGTGCTGAAAGAAGGGCTGTCGCTCAGTCAGGCCGCCAGAAAGTACGACATCCCCTACCCGACGTTCGTCCTCTACGCCAATCGAGTGCACAATATGCTAGGACCAAGTGCCGACGGCGGAGCCGGTGAGTATCTCCGTCCCAAGGGCCGGGGTCGACCCCAGAGAATTCTGCTCGGTGTCTGGCCCGACGAGCATATCCGAGGAGTTATACGAGCGGTCGTATTCCGGGACGGTCAGTCGGCCCACATCGTGAAAGAGGAATCTACAACGATGTATCCGAGCCTGGCGAGCTACGCCGCGTGTAACGGGCCCGAGGGTGCCGTGAGTCCGGGTGCCGCTGCCGCCGCTGCCGTAGCCGCCGTAGCCCAAGGCTTGAGACATCAGATGTGCAGCATGGTGGCCGCCGCTCATTCCCAACAACACGACCTGATCGGCACGAACCTCTCCGCCAACCTGTCCACGAACATCCAAGCCGCGATTCAGGCGCagcacaacaacaacaacaacaataacaacaacaacaacaacaacaacagcggGAACTCGCCGTTGAACCTCGGTCTCGCGAGTCCCGGCTCCGGAGCACCGGAAAGTCCGATGGAGAGTCCTTTGGCGAGTCCTCTCGGGCCGCTGATGGATCCGACCCACATACCGGGCAGCGTCGAGGTCGGCATCGGCGTCAGCGGGATGACTTACAAGCCACCGCGCAGCTTCACCAGTCCCCATCCCGAGAATCTGTTTCAAGAGGATATAGCGGATCTTGTGAAGAGTTCCCATTCCCTGAAGGACAAGGATAAGATACCGGTCAAGCTGGAACCCCTAACGGACTCGCGGTGCGAATAG
- Protein Sequence
- MDCSPFRGGVTADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGQSAHIVKEESTTMYPSLASYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDLIGTNLSANLSTNIQAAIQAQHNNNNNNNNNNNNNNSGNSPLNLGLASPGSGAPESPMESPLASPLGPLMDPTHIPGSVEVGIGVSGMTYKPPRSFTSPHPENLFQEDIADLVKSSHSLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01474600;
- 90% Identity
- iTF_00253480;
- 80% Identity
- -