Cfil006297.1
Basic Information
- Insect
- Calameuta filiformis
- Gene Symbol
- -
- Assembly
- GCA_030142265.1
- Location
- JARQSU010000385.1:120606-125610[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.3e-05 0.00094 19.6 0.1 2 23 66 87 65 87 0.96 2 20 0.07 5.2 7.8 0.2 1 23 102 124 102 124 0.98 3 20 0.035 2.6 8.8 3.5 1 23 130 153 130 153 0.96 4 20 1.3e-05 0.001 19.5 1.3 1 23 159 181 159 181 0.97 5 20 0.0021 0.16 12.6 1.0 1 23 185 207 185 207 0.97 6 20 6.1e-05 0.0046 17.4 0.4 3 23 215 235 213 235 0.96 7 20 3.1e-05 0.0023 18.4 0.2 1 23 241 263 241 263 0.98 8 20 0.041 3.1 8.5 1.0 1 23 270 292 270 292 0.97 9 20 5.7e-06 0.00043 20.7 0.1 1 23 297 319 297 319 0.99 10 20 1.1e-05 0.00082 19.8 0.7 1 23 325 347 325 347 0.96 11 20 2.4e-05 0.0018 18.8 1.9 1 21 353 373 353 374 0.96 12 20 0.00071 0.053 14.1 2.3 1 23 469 491 469 491 0.96 13 20 1.1e-05 0.0008 19.8 2.4 2 23 525 546 524 546 0.96 14 20 0.00021 0.016 15.8 2.2 1 23 550 572 550 572 0.97 15 20 0.00018 0.013 16.0 1.0 3 23 580 600 579 600 0.97 16 20 1.8e-05 0.0013 19.1 4.5 2 23 607 628 606 628 0.96 17 20 2 1.5e+02 3.2 4.3 1 23 637 659 637 659 0.88 18 20 0.12 9.2 7.1 0.1 2 23 666 686 665 686 0.94 19 20 7e-07 5.2e-05 23.6 1.3 2 23 693 714 693 714 0.97 20 20 2.9e-07 2.1e-05 24.8 1.9 1 23 720 742 720 742 0.99
Sequence Information
- Coding Sequence
- ATGGATTCTCTCATGACTGTGAAAACGAAGGCCTTAACTATTTCTAGCGTTGATTTTAACGCCGGTGGTGCAGCTACCTTTGAGATTTGGCAATCCGGGATGCGGATGCTGTGTGCCTTAGTTCCTAAACATCAACCGTCCTTTCGCAAATCGCGCGAGATTCGGAATCCTTCGCGAAAATCGGACAGCCGGCTCGTCTGCGACCTCTGCGACAGGTCCTTTAGCGAGAGGGGCGAGCTGCAAGCTCATCGTCGCGCTCACAGGCCGACCTACATCCCGGAGGACGGGCAAGAGCCGGCGATGTACGAGTGCGACTTTTGTGGGTTGCGAATCCGCCTGAAGGACGTGTTTGCCGAGCACAGGCGCATCCACACCGGCGAGGAGCCTTATCGGTGCCAGAGCTGCGGGCAGCGATTTGCCACGCATCAGAGGCTCTACTATCACAGAATTCGCGAGCACATCCAGGAGAAACCCTTCTTCTGCAAGGTCTGCGGCAAAGCCTTCAAGCTCCGACAGTTCCTTAACGTCCACATGAAAATACACGACAAGGTTTTCATCTGCGACGTCTGCGGCGCTTCGACCGCTACGCTCTGCAATCTTGAGTATCACAAAAAGCGGCACAACAAGGACTACGAGCTCTTCTGCGAGATCTGCACCAAGGGCTTCTACACGAAGGCCAGCCTCCGGCAGCACGCGATTACCCACTCGGGCGAGAAGCCCTTCCCCTGTCCAACCTGCGGCTCCTCCTTCGGCAGCCGAGGCTACCTGAAGCTCCACATGGCGAAGCACGGAACCCGCGAGAAGAAGTTCGCCTGCGAATTCTGCGACTTCCGGAGCTGCTGGCGCGGCGCCCTCAAGGTTCACATGCGAATTCATACCGGGGAGAATTACGAGTGTCGCGTGTGCGGGAAATCGGTATCCAGTAAGGCCTACCTGGGCATCCACATGCGGATCCACACGGGCGAGAAGCCGCACGCTTGCGAGATCTGCGGAAAGGCCTTCAGCGCCAGGAAGTATCTCAGGATTCATGGGCGCACGCACACCGGCGAGAAGCCTTACGAATGCTCCTTCTGCCAGAAGAGATTCACTCAAAGAGGGACGCTCACTGCTCACCTCAGGCATTTGGGGATAGGCGCTATAAGAAAAACGGCAAAGAAGGTGAGTGTATCGAATCATTCGGCAGAAGTCTACTCTCTCCGGTTGAACCTTCGAGCAGCTTTGGATAGCGAGAAGAGTCagagggagaaggaggaggaggaggaggtggaggtggaggatgATGTGGAGGTGGAGCAGGGGCAGGGAGCGGCGGGGTTTTCCGACGCTGTCGGAGGGACGGGTCCTCGGTGCGATCCTGCGATCGTGCGCTTCGGTAGGAGCCTTCAGGAGGGATACGGCGGGACGCACGAGTGCGAAATATGCGGTACAAGCTTCCACGGGAAACTTCAGCTGAACAAGCATCGGCTGGGGCACGCGAAGGTGTCTTCGcaaaagaagcagaagaagcaAGCGCAAAGACACAAGCTTTCGAAAATGCGAAATGTCCAAGAGAAATGTTCCCAGGGTCCGATCGAGTGCAACGTCTGTCACAAAGttttcaagaagaagaagtactTGAACGTCCACATGACTCTTCACGGAGCGCCTCATATATGTCACGTGTGCGGCGCGAAGCTCACTTCCGAGTATTATTTGAAGATTCACATAAGACGGCACAACAAAGAATTCACGGAATTTTGTAAAGTCTGCAACAAGGGATTCTACCTGAAGGCGACGCTGAAGACGCACATGAGCGTCCACACGGACGAGAAGCCGTGCACCTGCGAGATTTGCCACAAGTCCTTCGGGAATCGGGTTTACCTCAGGAGCCACATGAAGATCCACAGCAGACCGGAGACTAGGAAAAGATACAAGTGCGAGATATGCAGCTTCGAAACGTTTTACAGCTATTGCTACAAGGAGCACATGTGGACGCACACTGGGGAGAGTCAAGTGCCCTGCGAAGTATGTGGAAAGCTCATTCGTCGGCAGTACATGAAGATTCACATTAGGATTCACACTGGCGAGAAGCCGGAGGTCTGTGAATTTTGCGGAAAAGCTTTCAGCTCGCGAAAGTACTTGATCAAGCACAGAAGGACGCACACTGGCGAGAGGCCCTACAAGTGTAAGATCTGCGAGAAAAGATTTACTCAGCGTGGAACTCTGAGCGCGCATCTCAGGCGCCACGATAATCCAAAATGA
- Protein Sequence
- MDSLMTVKTKALTISSVDFNAGGAATFEIWQSGMRMLCALVPKHQPSFRKSREIRNPSRKSDSRLVCDLCDRSFSERGELQAHRRAHRPTYIPEDGQEPAMYECDFCGLRIRLKDVFAEHRRIHTGEEPYRCQSCGQRFATHQRLYYHRIREHIQEKPFFCKVCGKAFKLRQFLNVHMKIHDKVFICDVCGASTATLCNLEYHKKRHNKDYELFCEICTKGFYTKASLRQHAITHSGEKPFPCPTCGSSFGSRGYLKLHMAKHGTREKKFACEFCDFRSCWRGALKVHMRIHTGENYECRVCGKSVSSKAYLGIHMRIHTGEKPHACEICGKAFSARKYLRIHGRTHTGEKPYECSFCQKRFTQRGTLTAHLRHLGIGAIRKTAKKVSVSNHSAEVYSLRLNLRAALDSEKSQREKEEEEEVEVEDDVEVEQGQGAAGFSDAVGGTGPRCDPAIVRFGRSLQEGYGGTHECEICGTSFHGKLQLNKHRLGHAKVSSQKKQKKQAQRHKLSKMRNVQEKCSQGPIECNVCHKVFKKKKYLNVHMTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCKVCNKGFYLKATLKTHMSVHTDEKPCTCEICHKSFGNRVYLRSHMKIHSRPETRKRYKCEICSFETFYSYCYKEHMWTHTGESQVPCEVCGKLIRRQYMKIHIRIHTGEKPEVCEFCGKAFSSRKYLIKHRRTHTGERPYKCKICEKRFTQRGTLSAHLRRHDNPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00297729; iTF_01475622; iTF_00293898; iTF_00291713; iTF_00254509; iTF_00296973; iTF_01198829; iTF_00293135; iTF_00253750; iTF_00252986; iTF_00255249; iTF_00294656; iTF_01473358;
- 90% Identity
- iTF_00253750;
- 80% Identity
- -