Basic Information

Insect: Cephus nigrinus
Gene Symbol: -
Assembly: GCA_030142395.1
Location: JARQSZ010000456.1:166448-168981[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.044 3.6 8.5 0.2 1 23 2 24 2 24 0.98

2 19 0.25 21 6.1 3.8 1 23 30 53 30 53 0.96

3 19 2e-05 0.0016 19.0 2.6 1 23 59 81 59 81 0.98

4 19 0.17 14 6.6 2.6 1 23 85 107 85 107 0.96

5 19 2.3e-05 0.0019 18.8 1.0 3 23 115 135 113 135 0.97

6 19 1e-06 8.2e-05 23.1 0.5 1 23 141 163 141 163 0.98

7 19 0.043 3.5 8.5 1.5 1 23 170 192 170 192 0.98

8 19 4.8e-06 0.00039 20.9 0.1 1 23 197 219 197 219 0.99

9 19 9.2e-06 0.00075 20.1 0.7 1 23 225 247 225 247 0.96

10 19 3.3e-06 0.00027 21.4 2.1 1 22 253 274 253 274 0.96

11 19 0.00064 0.052 14.3 1.6 1 23 361 383 361 383 0.96

12 19 9e-06 0.00074 20.1 2.4 2 23 417 438 416 438 0.96

13 19 0.00018 0.015 16.0 2.2 1 23 442 464 442 464 0.97

14 19 0.00029 0.024 15.3 0.7 3 23 472 492 471 492 0.97

15 19 1.5e-05 0.0012 19.4 4.5 2 23 499 520 498 520 0.96

16 19 1.7 1.4e+02 3.5 4.3 1 23 529 551 529 551 0.88

17 19 0.1 8.5 7.3 0.1 2 23 558 578 557 578 0.94

18 19 5.9e-07 4.8e-05 23.8 1.3 2 23 585 606 585 606 0.97

19 19 2.4e-07 2e-05 25.0 1.9 1 23 612 634 612 634 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.044	3.6	8.5	0.2	1	23	2	24	2	24	0.98
2	19	0.25	21	6.1	3.8	1	23	30	53	30	53	0.96
3	19	2e-05	0.0016	19.0	2.6	1	23	59	81	59	81	0.98
4	19	0.17	14	6.6	2.6	1	23	85	107	85	107	0.96
5	19	2.3e-05	0.0019	18.8	1.0	3	23	115	135	113	135	0.97
6	19	1e-06	8.2e-05	23.1	0.5	1	23	141	163	141	163	0.98
7	19	0.043	3.5	8.5	1.5	1	23	170	192	170	192	0.98
8	19	4.8e-06	0.00039	20.9	0.1	1	23	197	219	197	219	0.99
9	19	9.2e-06	0.00075	20.1	0.7	1	23	225	247	225	247	0.96
10	19	3.3e-06	0.00027	21.4	2.1	1	22	253	274	253	274	0.96
11	19	0.00064	0.052	14.3	1.6	1	23	361	383	361	383	0.96
12	19	9e-06	0.00074	20.1	2.4	2	23	417	438	416	438	0.96
13	19	0.00018	0.015	16.0	2.2	1	23	442	464	442	464	0.97
14	19	0.00029	0.024	15.3	0.7	3	23	472	492	471	492	0.97
15	19	1.5e-05	0.0012	19.4	4.5	2	23	499	520	498	520	0.96
16	19	1.7	1.4e+02	3.5	4.3	1	23	529	551	529	551	0.88
17	19	0.1	8.5	7.3	0.1	2	23	558	578	557	578	0.94
18	19	5.9e-07	4.8e-05	23.8	1.3	2	23	585	606	585	606	0.97
19	19	2.4e-07	2e-05	25.0	1.9	1	23	612	634	612	634	0.99

Sequence Information

Coding Sequence: ATGTACGAGTGCGACTTTTGTGGGATGCGAATTCGCCTGAAGGACGTGTTTGCCGAGCACAGGCGCATTCACACCGGCGAGGAGCCCTATCGGTGCCAGAGCTGCGAGCAGCGATTTGCTACGCACCAGAGACTCTACTATCACAGAATTCGCGAGCACATCCAGGAGAAGCCCTTCCACTGCAAGGTCTGCGGCAAAGCCTTCAAGCTTCGACAGTTCCTTAACGTCCACATGAAAATACACGACAAGGTCTTCATCTGCGACGTCTGCGGCGCCTCGACGGCTACGCTCTGCAATCTGGAGTGTCACAAGAAGCGGCACAGCAAGGAGTACGATCTCTTCTGTGAGACATGCACCAAGGGCTTCTACACGAAGGCCAGCCTTCAGCAGCACCTGATGACGCACTCGGGCGAGAAGCCCTTTCCCTGCCCAACCTGCGGCTCCTCCTTCAGCAGCCGAAGCTACCTCAAGCTGCACATGGCGAAGCACGGAACCCGCGAGAAGAAGTACACCTGCGAATTCTGCGAGTTTCGGAGCTGCTGGCGCGGCGCCCTCAAGGTTCACATGCGAATTCATACTGGGGAGAATTACGAGTGTCGCGTGTGCGGGAAATCGGTCTCCAGTAAGGCCTACCTGGGCATCCACATGCGCATTCACACGGGTGAAAAGCCGCACGCCTGCGAGATCTGCGGAAAGGCCTTCAGTGCCAGGAAGTACCTCAGGATTCATGGGCGCACGCACACCGGCGAGAAGCCTTACGAATGCTCACACTGCCGGAAGAGATTCACTCAAAAAGGGACGCTCACTGCTCACCTCAGGCGTTTGGGGATAGGCGCTATAAGAAAGACGACAAAGAAGGTGAGTGTATCGAATCATTCGGCAGAAGTCCACTTCCTCCGGTTGAACCTTCGAGCAGCTTTGGATAGCGAGAAGAGTCaaagggggagggagagggaggaggaggaggagggacAGGGAGCGGAGGGGTTTCCTGATGCTGCCGGAGGCAGGGATCCTCAGTGCGATTCTCCTGCGATCGTGCGCTTCGGCAGGAGCCTTCAGGAGGGATACGGCGGGACACACGAGTGCGAAATATGCGGTATAAGCTTCCACGGTAAACTTCAGCTGAATAAGCACAGGCTGGGGCACGTGAAGATGTCTTCgcaaaagaagcaaaagaagCAAGCGCAAAAACACAAGCTttcgaaaatacgaaataccCAAGAAAAGTGTTCCCAGGGTCCGATCGAGTGCAACGTCTGTcacaaagttttcaaaaagaagaagtaCTTGAACGTCCACATGACTCTTCACGGAGCGCCTCATATATGTCATGTTTGCGGCGCGAAGCTCACTTCCGAGTATTATTTGAAGATCCACATAAGACGGCACAACAAAGAATTCACGGAATTTTGTGAAGTCTGCAAGAAGGGATTCTACCTGAAGGCCACTCTGAAGACGCACATGAGCGTCCACACGGACGAGAAGCCGTGCACGTGCGAGATTTGCCACAAGTCTTTCGGGAATCGTGTTTATCTCAGGAGCCACATGAAGATCCACAGCAGACCGGAGACCAGGAAaagatacaagtgcgagattTGCAGCTTCGAAACCTTTTACAGTTATTGTTACAAGGAGCACATGTGGACGCACACTGGCGAGAGTCAAGTGCCCTGCGAAGTATGTGGAAAGCTCATTCGTCGGCAGTACATGAAGATTCACATTAGAATTCACACTGGCGAGAAGCCCGAGGTCTGTGAGTTTTGCGGCAAAGCCTTCAGCTCGCGAAAGTACTTGATAAAGCACAGAAGGACGCACACTGGCGAGAGACCCTACAAGTGTAAGATTTGTGAGAAAAGATTCACTCAGCGTGGAACTCTGAGCGCACACCTCAGGCGCCACGATAATCCAAAATGA
Protein Sequence: MYECDFCGMRIRLKDVFAEHRRIHTGEEPYRCQSCEQRFATHQRLYYHRIREHIQEKPFHCKVCGKAFKLRQFLNVHMKIHDKVFICDVCGASTATLCNLECHKKRHSKEYDLFCETCTKGFYTKASLQQHLMTHSGEKPFPCPTCGSSFSSRSYLKLHMAKHGTREKKYTCEFCEFRSCWRGALKVHMRIHTGENYECRVCGKSVSSKAYLGIHMRIHTGEKPHACEICGKAFSARKYLRIHGRTHTGEKPYECSHCRKRFTQKGTLTAHLRRLGIGAIRKTTKKVSVSNHSAEVHFLRLNLRAALDSEKSQRGREREEEEEGQGAEGFPDAAGGRDPQCDSPAIVRFGRSLQEGYGGTHECEICGISFHGKLQLNKHRLGHVKMSSQKKQKKQAQKHKLSKIRNTQEKCSQGPIECNVCHKVFKKKKYLNVHMTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCKKGFYLKATLKTHMSVHTDEKPCTCEICHKSFGNRVYLRSHMKIHSRPETRKRYKCEICSFETFYSYCYKEHMWTHTGESQVPCEVCGKLIRRQYMKIHIRIHTGEKPEVCEFCGKAFSSRKYLIKHRRTHTGERPYKCKICEKRFTQRGTLSAHLRRHDNPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00252244;
90% Identity: iTF_00253750;
80% Identity: -