Cfum006443.1
Basic Information
- Insect
- Cephus fumipennis
- Gene Symbol
- -
- Assembly
- GCA_030142355.1
- Location
- JARQSY010000477.1:129821-132929[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 6.3e-05 0.0055 17.5 0.7 2 23 46 67 45 67 0.96 2 20 0.053 4.6 8.3 0.2 1 23 82 104 82 104 0.98 3 20 0.3 26 5.9 3.8 1 23 110 133 110 133 0.96 4 20 2.4e-05 0.0021 18.8 2.6 1 23 139 161 139 161 0.98 5 20 0.2 18 6.4 2.6 1 23 165 187 165 187 0.96 6 20 2.7e-05 0.0024 18.6 1.0 3 23 195 215 193 215 0.97 7 20 3.8e-06 0.00033 21.3 0.3 1 23 221 243 221 243 0.98 8 20 0.015 1.3 10.0 1.6 1 23 250 272 250 272 0.98 9 20 5.7e-06 0.0005 20.8 0.1 1 23 277 299 277 299 0.99 10 20 1.1e-05 0.00095 19.9 0.7 1 23 305 327 305 327 0.96 11 20 1e-05 0.0009 20.0 2.0 1 22 333 354 333 354 0.96 12 20 0.00011 0.0099 16.7 1.3 1 23 436 458 436 458 0.96 13 20 1.1e-05 0.00094 19.9 2.4 2 23 492 513 491 513 0.96 14 20 0.00021 0.018 15.8 2.2 1 23 517 539 517 539 0.97 15 20 0.00035 0.03 15.2 0.7 3 23 547 567 546 567 0.97 16 20 1.8e-05 0.0016 19.2 4.5 2 23 574 595 573 595 0.96 17 20 2 1.8e+02 3.3 4.3 1 23 604 626 604 626 0.88 18 20 0.12 11 7.1 0.1 2 23 633 653 632 653 0.94 19 20 7e-07 6.1e-05 23.6 1.3 2 23 660 681 660 681 0.97 20 20 2.3e-07 2e-05 25.1 1.5 1 23 687 709 687 709 0.99
Sequence Information
- Coding Sequence
- ATGCATCGATCGCGGGAATCGTCGGCCATCTCTCTTCTGGACAGGCTAGTCTCGAATTCGGTGAAATTACAATGGGCTCGGATCGTGACATCGCGCGAGAATCGGAATCCTTCGCGAAAATCGGACATCCGGCTTGTCTGCGACTTCTGCGACAGGTCCTTTAGCGAGAGGGCCGAGCTGCACGCTCATCGTCGTGCGCACAAGCCGACCTACATCCCGGAGGACGGGCAAGAGCCGGCGATGTACGAGTGCGACTTTTGTGGGATGCGAATTCGCCTGAAGGACGTGTTTGCCGAGCACAGGCGCATTCACACCGGCGAGGAGCCCTATCGGTGCCAGAGCTGCGAGCAGCGATTTGCTACGCATCAGAGACTCTACTATCACAGAATTCGCGAGCACATCCAGGAGAAGCCTTTCCACTGCAAGGTCTGCGGCAAAGCCTTCAAGCTTCGACAGTTCCTTAACGTCCACATGAAAATACACGATAAGGTTTTCATCTGCGACGTCTGCGGCGCTTCGACGGCTACGCTCTGCAATCTGGAGTGTCACAAAAAGCGGCACAACAAGGAGTACGATCTCTTCTGTGAGACATGCACCAAGGGCTTCTACACGAAGGCCAGCCTTCAGCAGCACCTGATGACGCACTCGGGCGAGAAGCCCTTTCCCTGCCCAACCTGCGGCTCCTCCTTCAGCAGCCGAGGCTACCTCAAGCTGCACATGGCGAAGCACGGAACCCGCGAGAAGAAGTACACCTGCGAATTCTGCGATTTTCGGAGCTGCTGGCGCGGCGCCCTCAAGGTTCACATGCGAATCCATACTGGGGAGAATTACGAGTGTCGCGTGTGCGGGAAATCGGTCTCCAGTAAAGCCTACCTGGGCATCCACATGCGCATTCACACGGGTGAGAAGCCGCACGCCTGCGAGATCTGCGGAAAGGCCTTCAGTGCCAGGAAGTATCTCAGGATTCATGGGCGCACGCACACCGGCGAGAAGCCTTACGAATGCTCACACTGCCGGAAGAGATTCACTCAAAAAGGGACGCTCAGTGCTCACCTCAGGCGTTTGGGGATAGGCGCTATAAGAAAGACGACAAAGAAGGTGAGTGTATCGAATCATTCGGCAGAAGTCCACTTCCTCCGGTTGAACCTTCGAGCAGCTTTGGATAGCGAGAAGAGTcagagggggagggagagggaggaggaggaggaggggttTCCTGATGCTGCCGGAGGCAGGGATCCTCAGTGCGATCCTCCTGCGACCGTGCGCTTCGGCAGGAGCCTTCGGGAGGGATACGGCGGGACACACGAGTGCGAAATATGCGGTATAAGCTTCCACGGTAAACTTCAGCTGAATAAGCACATGCTGGGGCACGTGAAGATGTCTTCgcaaaagaagcaaaagaagCAAGCGCAAAAACACAAGCTttcgaaaatacgaaatagCCAAGAAAAGTGTTCCCAGGGTCCGATCGAGTGCAACGTCTGTcacaaagttttcaaaaagaagaagtacTTGAACGTCCACATGACTCTTCACGGAGCGCCTCATATATGTCATGTTTGCGGCGCGAAGCTCACTTCCGAGTATTATTTGAAGATCCACATAAGACGGCACAACAAGGAATTCACGGAATTTTGTGAAGTCTGCAAGAAGGGATTCTACCTGAAGGCCACTCTGAAGACGCACATGAGCGTTCACACGGACGAGAAGCCGTGCACGTGCGAGATTTGCCACAAGTCTTTCGGGAATCGTGTTTATCTCAGGAGCCACATGAAGATCCACAGCAGACCGGAGACCAGGAAAAGATACAAGTGCGAGATTTGCAGCTTCGAAACGTTTTACAGTTATTGTTACAAGGAGCACATGTGGACGCACACTGGCGAGAGTCAAGTGCCCTGCGAAGTATGTGGAAAGCTCATTCGTCGGCAGTACATGAAGATTCACATTAGAATTCACACTGGCGAGAAGCCCGAGGTCTGTGAGTTTTGCGGCAAAGCCTTCAGCTCGCGAAAGTACTTGATAAAGCACAGAAGGACGCACACTGGCGAGAGACCCTACAAGTGTAACATTTGTGAGAAAAGATTCACTCAGCGTGGAACTCTGAGCGCACACCTCAGGCGCCACGATAATCCAAAATGA
- Protein Sequence
- MHRSRESSAISLLDRLVSNSVKLQWARIVTSRENRNPSRKSDIRLVCDFCDRSFSERAELHAHRRAHKPTYIPEDGQEPAMYECDFCGMRIRLKDVFAEHRRIHTGEEPYRCQSCEQRFATHQRLYYHRIREHIQEKPFHCKVCGKAFKLRQFLNVHMKIHDKVFICDVCGASTATLCNLECHKKRHNKEYDLFCETCTKGFYTKASLQQHLMTHSGEKPFPCPTCGSSFSSRGYLKLHMAKHGTREKKYTCEFCDFRSCWRGALKVHMRIHTGENYECRVCGKSVSSKAYLGIHMRIHTGEKPHACEICGKAFSARKYLRIHGRTHTGEKPYECSHCRKRFTQKGTLSAHLRRLGIGAIRKTTKKVSVSNHSAEVHFLRLNLRAALDSEKSQRGREREEEEEGFPDAAGGRDPQCDPPATVRFGRSLREGYGGTHECEICGISFHGKLQLNKHMLGHVKMSSQKKQKKQAQKHKLSKIRNSQEKCSQGPIECNVCHKVFKKKKYLNVHMTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCKKGFYLKATLKTHMSVHTDEKPCTCEICHKSFGNRVYLRSHMKIHSRPETRKRYKCEICSFETFYSYCYKEHMWTHTGESQVPCEVCGKLIRRQYMKIHIRIHTGEKPEVCEFCGKAFSSRKYLIKHRRTHTGERPYKCNICEKRFTQRGTLSAHLRRHDNPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00252244;
- 90% Identity
- iTF_00253750;
- 80% Identity
- -