Crun006516.1
Basic Information
- Insect
- Cephus runcator
- Gene Symbol
- -
- Assembly
- GCA_030142495.1
- Location
- JARQTC010000451.1:129884-132973[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.5e-05 0.0011 19.4 0.2 2 23 46 67 45 67 0.96 2 20 0.051 3.7 8.3 0.2 1 23 82 104 82 104 0.98 3 20 0.29 21 5.9 3.8 1 23 110 133 110 133 0.96 4 20 2.3e-05 0.0017 18.8 2.6 1 23 139 161 139 161 0.98 5 20 0.0011 0.077 13.6 0.9 1 23 165 187 165 187 0.98 6 20 2.7e-05 0.0019 18.6 1.0 3 23 195 215 193 215 0.97 7 20 3.7e-06 0.00027 21.3 0.3 1 23 221 243 221 243 0.98 8 20 0.015 1.1 10.0 1.6 1 23 250 272 250 272 0.98 9 20 5.6e-06 0.00041 20.8 0.1 1 23 277 299 277 299 0.99 10 20 1.1e-05 0.00077 19.9 0.7 1 23 305 327 305 327 0.96 11 20 3.9e-06 0.00028 21.2 2.1 1 22 333 354 333 354 0.96 12 20 5.3e-05 0.0039 17.7 0.6 1 23 439 461 439 461 0.96 13 20 1e-05 0.00076 19.9 2.4 2 23 495 516 494 516 0.96 14 20 0.00021 0.015 15.8 2.2 1 23 520 542 520 542 0.97 15 20 0.00034 0.025 15.1 0.7 3 23 550 570 549 570 0.97 16 20 1.7e-05 0.0013 19.2 4.5 2 23 577 598 576 598 0.96 17 20 2 1.5e+02 3.3 4.3 1 23 607 629 607 629 0.88 18 20 0.12 8.8 7.1 0.1 2 23 636 656 635 656 0.94 19 20 6.8e-07 5e-05 23.6 1.3 2 23 663 684 663 684 0.97 20 20 2.8e-07 2e-05 24.8 1.9 1 23 690 712 690 712 0.99
Sequence Information
- Coding Sequence
- ATGCATCGATCGCAGGAATTGTCGACCATCTCTCTTCTGGACAGGCTAGTCTCGAATTCGGTGAAATTACAATGGGCTCGGATCATGACATCGCGCGAGATTCGGAATCCTTCGCGAAAATCGGACATCCGGCTCGTCTGCGACTTCTGCGACAGGTCCTTTAGCGAGAGGGGCGAGCTGCAAGCTCATCGTCGTGCGCACAAGCCGACCTACATCCCGGAGGACGGGCAAGAGCCGGCGATGTACGAGTGCGACTTTTGTGGGATGCGAATTCGCCTGAAGGACGTGTTCGCCGAACACAGGCGCATTCACACCGGCGAGGAGCCCTATCGGTGCCAGAGCTGCGAGCAGCGATTCGCTACGCATCAGAGACTCTACTATCACAGAATTCGCGAGCACATCCAGGAGAAGCCCTTCCACTGCAAGGTCTGCGGCAAAGCCTTCAAGCTTCGACAGTTCCTTAACGTCCACATGAAAATACACGATAAGGTTTTCATCTGCGACGTCTGCGGCGCCTCGACGGCTACGCTCTGCAATCTTGAGTATCACAGAAAGCGGCACAACAAGGAGTACGATCTCTTCTGCGAGACATGCACCAAGGGCTTCTACACGAAGGCCAGCCTTCAGCAGCACTTGATGACGCACTCGGGCGAGAAGCCCTTTCCCTGTCCAACCTGCGGCTCCTCCTTCAGCAGCCGGGGCTACCTCAAGCTGCACATGGCGAAGCACGGGACCCGCGAGAAGAAGTACACCTGCGAATTCTGCGATTTTCGGAGCTGCTGGCGCGGCGCCCTCAAGGTTCACATGCGAATTCACACTGGGGAGAATTACGAGTGTCGCGTGTGCGGGAAATCGGTCTCCAGTAAAGCCTACCTGGGCATCCACATGCGCATTCACACGGGCGAGAAGCCGCACGCTTGCGAGATCTGCGGAAAGGCCTTCAGTGCCAGGAAGTATCTCAGGATTCATGGGCGCACGCACACCGGCGAGAAGCCTTACGAATGCTCGCACTGCCGGAAGAGATTCACTCAAAAAGGGACGCTCACCGCTCATCTCAGGCGTTTGGGGATAGGCGCTATAAGAAAGACGACAAAGAAGGTGAGTGTATCGAATCATTCGGCAGAAGTCCCGTTCCTCCGGTTGAACCTTCGAGCAGCTTTGGATAGCGAGAAGAGTCAGAGGGggaggaaggaggaggagggtgAGGGAGCGGAGGGGTTCCCTGATGCTGTCGGGGGCGGCGGGGGTCCTCAGTGCGATCCTCCTGCGATCGCGCGCTTCGACAGGAGCCTTCAGGAGGGATACGGCGGGACACACGAGTGCGAAATATGCGGTATAAGCTTCCGCGGTAAACTTCAGCTGAATAAGCACAGGCTGGGGCACGCGAAGATGTCTTCgcaaaagaagcaaaagaagCAAGCGCAAAAACACAAGCTttcgaaaatacgaaataGCCAAGAAAAGTGTTCCCAGGGTCCGATCGAGTGCAACGTCTGTcacaaagttttcaaaaagaagaagtaCTTGAACGTCCACATGACTCTTCACGGAGCGCCTCATATATGTCACGTTTGCGGCGCGAAGCTCACTTCCGAGTACTATTTGAAGATCCACATAAGACGGCACAACAAAGAATTCACGGAATTTTGTGAAGTCTGCAAGAAGGGATTCTACCTGAAGGCCACTCTGAAGACGCACATGAGCGTTCACACGGACGAGAAGCCGTGCACGTGCGAGATTTGCCACAAGTCTTTCGGGAATCGTGTTTATCTCAGGAGCCACATGAAGATCCACAGCAGACCGGAGACCAGGAAAAGATACAAGTGCGAGATTTGCAGCTTCGAAACGTTTTACAGTTATTGTTACAAGGAGCACATGTGGACGCACACTGGCGAGAGTCAAGTGCCCTGCGAAGTATGTGGAAAGCTCATTCGTCGGCAGTACATGAAGATTCACATTAGAATTCACACCGGCGAGAAGCCCGAGGTCTGTGAGTTTTGCGGGAAAGCCTTCAGCTCGCGAAAGTACTTGATAAAGCACAGAAGGACGCACACTGGCGAGAGACCCTACAAGTGTAAGATTTGTGAGAAAAGATTCACTCAGCGTGGAACTCTGAGCGCACACCTCAGACGCCACGATAATCCAAAGTGA
- Protein Sequence
- MHRSQELSTISLLDRLVSNSVKLQWARIMTSREIRNPSRKSDIRLVCDFCDRSFSERGELQAHRRAHKPTYIPEDGQEPAMYECDFCGMRIRLKDVFAEHRRIHTGEEPYRCQSCEQRFATHQRLYYHRIREHIQEKPFHCKVCGKAFKLRQFLNVHMKIHDKVFICDVCGASTATLCNLEYHRKRHNKEYDLFCETCTKGFYTKASLQQHLMTHSGEKPFPCPTCGSSFSSRGYLKLHMAKHGTREKKYTCEFCDFRSCWRGALKVHMRIHTGENYECRVCGKSVSSKAYLGIHMRIHTGEKPHACEICGKAFSARKYLRIHGRTHTGEKPYECSHCRKRFTQKGTLTAHLRRLGIGAIRKTTKKVSVSNHSAEVPFLRLNLRAALDSEKSQRGRKEEEGEGAEGFPDAVGGGGGPQCDPPAIARFDRSLQEGYGGTHECEICGISFRGKLQLNKHRLGHAKMSSQKKQKKQAQKHKLSKIRNSQEKCSQGPIECNVCHKVFKKKKYLNVHMTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCKKGFYLKATLKTHMSVHTDEKPCTCEICHKSFGNRVYLRSHMKIHSRPETRKRYKCEICSFETFYSYCYKEHMWTHTGESQVPCEVCGKLIRRQYMKIHIRIHTGEKPEVCEFCGKAFSSRKYLIKHRRTHTGERPYKCKICEKRFTQRGTLSAHLRRHDNPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00252244;
- 90% Identity
- iTF_00253750;
- 80% Identity
- -