Crja006632.1
Basic Information
- Insect
- Cephus rjabovi
- Gene Symbol
- -
- Assembly
- GCA_030264185.1
- Location
- JASCRG010000463.1:128164-132348[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.1e-05 0.0049 17.5 0.7 2 23 22 43 21 43 0.96 2 18 0.07 5.7 7.9 0.2 1 23 58 80 58 80 0.98 3 18 0.3 25 5.9 3.8 1 23 86 109 86 109 0.96 4 18 2.3e-05 0.0019 18.8 2.6 1 23 115 137 115 137 0.98 5 18 0.0021 0.17 12.7 1.0 1 23 141 163 141 163 0.97 6 18 2.7e-05 0.0022 18.6 1.0 3 23 171 191 169 191 0.97 7 18 3.7e-06 0.00031 21.4 0.3 1 23 197 219 197 219 0.98 8 18 0.015 1.2 10.0 1.6 1 23 226 248 226 248 0.98 9 18 5.7e-06 0.00047 20.8 0.1 1 23 253 275 253 275 0.99 10 18 0.00075 0.062 14.1 1.6 1 23 424 446 424 446 0.96 11 18 1.1e-05 0.00087 19.9 2.4 2 23 483 504 482 504 0.96 12 18 0.00021 0.017 15.8 2.2 1 23 508 530 508 530 0.97 13 18 0.00034 0.028 15.2 0.7 3 23 538 558 537 558 0.97 14 18 1.8e-05 0.0014 19.2 4.5 2 23 565 586 564 586 0.96 15 18 2 1.7e+02 3.3 4.3 1 23 595 617 595 617 0.88 16 18 0.12 10 7.1 0.1 2 23 624 644 623 644 0.94 17 18 7e-07 5.7e-05 23.6 1.3 2 23 651 672 651 672 0.97 18 18 2.8e-07 2.3e-05 24.9 1.9 1 23 678 700 678 700 0.99
Sequence Information
- Coding Sequence
- ATGCTCAGAACTCTACTATCGCGCGAGATTCGGAATCCTTCGCGAAAATCGGACATCCGGCTCGTCTGTGACTTCTGCGACAGGTCCTTTAGCGAGAGGGGCGAGTTGCACGCTCACCGTCGGGCTCACAAGCCGACCTACATCCCGGAGGACGGGCAAGAGCCGGCGATGTTCGAGTGCGACTTTTGTGGGATGCGAATTCGCCTGAAGGACGTGTTTGCCGAACACAGGCGGATTCACACCGGCGAGGAGCCCTATCGGTGCCAGAGCTGCGAGCAGCGATTTGCTACGCATCAGAGACTCTACTATCACAGAATTCGCGAGCACATCCAGGAGAAGCCCTTCCACTGCAAGGTCTGCGGCAAAGCCTTCAAGCTTCGACAGTTCCTTAACGTCCACATGAAAATACACGATAAGGTTTTCATCTGCGACGTCTGCGGCGCTTCGACGGCTACGCTCTGCAATCTTGAGTATCACAAAAAGCGGCACAACAAGGAGTACGATCTCTTCTGCGAGACATGCACCAAGGGCTTCTACACGAAGGCCAGCCTCCAGCAGCACTTGATGACGCACTCGGGCGAGAAGCCCTTTCCCTGTCCAACCTGCGGCTCCTCCTTCAGCAGCCGGGGCTACCTGAAGCTGCACATGGCGAAGCACGGAACCCGCGAGAAGAAGTACACCTGCGAATTCTGCGATTTTCGGAGCTGCTGGCGCGGCGCCCTCAAGGTTCACATGCGAATTCATACTGGGGAGAATTACGAGTGTCGCGTGTGCGGGAAATCGGTCTCCAGTAAAGCCTACCTGGGCATCCACATGCGCATTCACACGGGTGAGAAGCCGCACGCTTGCGAGAGTCTGCGGAAAGGCCTTCAGTGCCAGGAAGTATCTCAGGATTCATGGGCGCACGCACACCGGCGAGAAGCCTTACGAATGCTCACACTGCCGGAAGAGATTCACTCAAAAAGGGACGCTCACTGCTCACCTCAGCCAATTTGTTGTCTTTGCAGGCGTTTGGGGATAGGCGCTATAAGAAAGACGGCAAAGAAGGTGAGTGTATCGAATCATTCGGCAGAAGTCCACTTCCTCCGGTTGAACCTTCGAGCAGCTTTGGATAGCGAGAAGAGTcagagggggagggagagggaggaggaggaggagggacAGGGAGCGGAGGGGTTTCCTGATGCTGTCGGAGGCAGGGGTCCTCAGTGCGATCCTCCTGCGGTCGTGCGCTTCGGCAGGAGCCTTCAGGAGGGATACGGCGGGGCACACGAGTGCGAAATATGCGGCATAAGCTTCCACGGTAAACTTCAGCTGAATAAGCACAGGCTGGGGCACGTGAAGATGTCTTcgcaaaagaaacaaaagaagcaaaagaagCAAGCGCAAAAACACAAGCTTTCGAAAATACGAAACAGCCAAGAAAAGTGTTCCCAGGGTCCGATCGAGTGCAACGTCTGTcacaaagttttcaaaaagaaGAAGTACTTGAACGTCCACATGACTCTTCACGGAGCGCCTCATATATGTCATGTTTGCGGCGCGAAGCTCACTTCCGAGTATTATTTGAAGATCCACATAAGACGGCACAACAAAGAATTCACGGAATTTTGTGAAGTCTGCAAGAAGGGATTCTACCTGAAGGCCACTCTGAAGACGCACATGAGCGTTCACACGGACGAGAAGCCGTGCACGTGCGAGATTTGTCACAAGTCTTTCGGGAATCGTGTTTATCTCAGGAGCCACATGAAGATCCACAGCAGACCGGAGAGCAGGAAAAGATACAAGTGCGAGATTTGCAGCTTCGAAACGTTTTACAGTTATTGTTACAAGGAGCACATGTGGACGCACACTGGCGAGAGTCAAGTGCCCTGCGAAGTATGTGGAAAGCTCATTCGTCGGCAGTACATGAAGATTCACATTAGAATTCACACTGGCGAGAAGCCCGAGGTCTGTGAGTTTTGCGGCAAAGCCTTCAGCTCGCGAAAGTACTTGATAAAGCACAGAAGGACGCACACTGGCGAGAGACCCTACAAGTGTAAGATTTGTGAGAAAAGATTCACTCAGCGTGGAACTCTGAGCGCGCACCTCAGACGCCACGATAATCCAAAATGA
- Protein Sequence
- MLRTLLSREIRNPSRKSDIRLVCDFCDRSFSERGELHAHRRAHKPTYIPEDGQEPAMFECDFCGMRIRLKDVFAEHRRIHTGEEPYRCQSCEQRFATHQRLYYHRIREHIQEKPFHCKVCGKAFKLRQFLNVHMKIHDKVFICDVCGASTATLCNLEYHKKRHNKEYDLFCETCTKGFYTKASLQQHLMTHSGEKPFPCPTCGSSFSSRGYLKLHMAKHGTREKKYTCEFCDFRSCWRGALKVHMRIHTGENYECRVCGKSVSSKAYLGIHMRIHTGEKPHACESLRKGLQCQEVSQDSWAHAHRREALRMLTLPEEIHSKRDAHCSPQPICCLCRRLGIGAIRKTAKKVSVSNHSAEVHFLRLNLRAALDSEKSQRGREREEEEEGQGAEGFPDAVGGRGPQCDPPAVVRFGRSLQEGYGGAHECEICGISFHGKLQLNKHRLGHVKMSSQKKQKKQKKQAQKHKLSKIRNSQEKCSQGPIECNVCHKVFKKKKYLNVHMTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCKKGFYLKATLKTHMSVHTDEKPCTCEICHKSFGNRVYLRSHMKIHSRPESRKRYKCEICSFETFYSYCYKEHMWTHTGESQVPCEVCGKLIRRQYMKIHIRIHTGEKPEVCEFCGKAFSSRKYLIKHRRTHTGERPYKCKICEKRFTQRGTLSAHLRRHDNPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00252244;
- 90% Identity
- -
- 80% Identity
- -