Tiud006374.1
Basic Information
- Insect
- Trachelus iudaicus
- Gene Symbol
- ZBTB41
- Assembly
- GCA_030142595.1
- Location
- JARQTH010000353.1:124409-129344[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.6 1.8e+02 2.9 0.3 10 23 69 82 67 82 0.91 2 17 0.085 5.8 7.6 0.9 3 23 100 120 97 120 0.91 3 17 0.32 22 5.8 3.8 1 23 126 149 126 149 0.96 4 17 1.6e-05 0.0011 19.3 3.0 1 23 155 177 155 177 0.98 5 17 0.0023 0.16 12.5 1.0 1 23 181 203 181 203 0.97 6 17 0.00026 0.018 15.5 1.2 3 23 211 231 209 231 0.96 7 17 9.8e-06 0.00067 20.0 0.3 1 23 237 259 237 259 0.98 8 17 0.098 6.7 7.4 1.2 1 23 266 288 266 288 0.98 9 17 0.0008 0.055 14.0 1.6 1 23 490 512 490 512 0.96 10 17 4.6e-06 0.00032 21.0 1.0 2 23 549 570 548 570 0.96 11 17 0.00022 0.015 15.7 2.2 1 23 574 596 574 596 0.97 12 17 0.00021 0.014 15.8 0.6 3 23 604 624 603 624 0.97 13 17 1.9e-05 0.0013 19.1 4.5 2 23 631 652 630 652 0.96 14 17 2.2 1.5e+02 3.2 4.3 1 23 661 683 661 683 0.88 15 17 0.13 8.9 7.0 0.1 2 23 690 710 689 710 0.94 16 17 7.4e-07 5.1e-05 23.5 1.3 2 23 717 738 717 738 0.97 17 17 2.5e-07 1.7e-05 25.0 1.5 1 23 744 766 744 766 0.99
Sequence Information
- Coding Sequence
- ATGGATTCTCTCATGACTGTGAAAACGCAGGCCTTAACTATTTCTAGCGTTGATTTTAACGCCGGTGATGCAGCTACCTTAGAGATTTGGCAATCCGGAATGCGGATGCTGTGTGCCTTAGTTCCTAAATATCAACCGTCCTTTCACAAATCGCGCGAGACTCGGAATCCTTCGCGAGAATCGGACAGCCGGCTCCTCTGCGACTTCTGCGAGAGGTCCGAGCTCCACGCTCATCGTCGCGCTCACAAGCCGACCTACATCCCGGAGAACGGGCAAGAGCCGGCGATGTACGAGTGCTGCGACTTTTGTGGGATGCGAATTCGCCTGAAGGACGCCTTTGCCGAACACAGGCGCATTCACACCGGCCAGGAGCCTTATCGGTGCCAGAGCTGCGAGCAGCGATTTGCTACGCATCAGAGACTCTACTATCACAGAATTCGGGAGCACATCCAGGAGAAGCCCTTCCACTGCAAGGTATGCGGCAAAGTCTTCAAGCTTCGGCGGTTCCTTAACGTCCACATGAAAATACACGATAAGGTTTTCATCTGCGACGTCTGCGGCGCTTCGACGGCCACGCTCTGCAATCTTGAGTATCACAAGAAGCGGCACAACAAGGAGTACGATCTCTTCTGCGATACGTGCACCAAGGGCTTCTACACCAAGGCCAGCCTTGAGCAGCACACGACGACGCACTCGGGCGAGAAGCCCTTTCCCTGTCCAACCTGCGGCTCCTCCTTCGGCAGCCGAAGCTACCTAAAACTGCACATGGCCAAGCACGGAACCCGCGAGAAGAAGTACACCTGCGAGTTCTGCGATTTTCGAAGCTGCTGGCGCGGCGCCCTCAAGGTCCACGTGCGAATTCATACTGGGGAGAATTGCGAGTGTCGCGTGTGCGGGAAATTGGTGAGAAGCCGCACGCTTGCGAGATTTGCGGAAAGGCCTTCAGTGCCAGGAAGTATCTCAGGATCCATGGGCGCACGCACACCGGCGAGAAGCCTTACGAATGCTCACACTGCCGGAAGAGATTCACTCAAAAAGGAACTCTCACTGCTCATCTCAGGTCCCACCGGAAGGCCACCGACTCCATCGGACTACTCCTCCTTTGATTCTCCCTTCTCCCATTCGACAGATATCTCGCTTCCCCTCTTGCAATCGTTGCGTTTGGGGATAGGCGCTATAAGAAAGACGACAAAGAAGGTGAGTGAATCGAATCATTCGGCAGAAGTCCACTCCCTCCGGTTGAACCTTCGGGCAGCTTTGGATAGCGAGAAGAGTCAGAGTCAGAtggagagggaggaggaggaggaggaggaggaggaggaggaggtggttGTGGTGGTGGAGCAGGGGCAGGGAGAGGGAGCGGAGGGGTTTTCTGATGCTGTCGGAGGCACGGCGGCTCCTCGGTGCGATCCTCCGGCGATCGTGCGCTTCGGTAGGAGCCTTCAGGAGGGGTACGGCGGGACACACGAGTGCGAAATATGCGGTATAAGTTTCCACGGTAAACTTCAGCTGAATAAGCACAGGCTGGGACACGCGAAGATGTCTTCGCAAAAGAAGcgaaagaagcaaaagaagcAAGCGCAAAAACACAAGCTttcgaaaatacgaaatagCCAAGAAAAGTGTGCCCAGGGTCCGATCGAGTGCAACATCTGTCagaaagttttcaaaaagaagaagtacTTGAATGTCCACATGACTCTTCACGGAGCGCCACATATATGTCACGTTTGCGGCGCGAAGCTCACTTCCGAGTATTATTTGAAGATCCACATAAGACGGCACAACAAAGAATTCACGGAATTTTGTGAAGTCTGCAACAAGGGATTCTACCTGAAGGCCACCCTGAAAACGCACATGAGCGTTCACACGAACGAGAAGCCGTGCACGTGCGAGATTTGCCACAAGTCTTTCGGGAATCGCGTTTATCTCAGGAGCCACATGAAGATCCACAGCAGACCGGAGACTAGGAAGAGATACAAGTGCGAGATATGCAGCTTCGAAACGTTTTACAGTTATTGTTACAAGGAGCACATGTGGACGCACACTGGCGAGAGTCAAGTGCCCTGCGAAGTATGTGGAAAGCTCATTCGTCGGCAGTACATGAAGATTCACATTAGAATTCACACCGGCGAGAAGCCCGAGGTCTGTGAGTTTTGCGGCAAAGCCTTCAGCTCGCGGAAGTACTTGATAAAGCACAGAAGGACGCACACTGGCGAGAGACCCTACAAGTGCAACATCTGTGAGAAAAGATTCACTCAGCGTGGAACTCTGAGCGCACACCTCAGACGTCACGATAGTCCAAAATGA
- Protein Sequence
- MDSLMTVKTQALTISSVDFNAGDAATLEIWQSGMRMLCALVPKYQPSFHKSRETRNPSRESDSRLLCDFCERSELHAHRRAHKPTYIPENGQEPAMYECCDFCGMRIRLKDAFAEHRRIHTGQEPYRCQSCEQRFATHQRLYYHRIREHIQEKPFHCKVCGKVFKLRRFLNVHMKIHDKVFICDVCGASTATLCNLEYHKKRHNKEYDLFCDTCTKGFYTKASLEQHTTTHSGEKPFPCPTCGSSFGSRSYLKLHMAKHGTREKKYTCEFCDFRSCWRGALKVHVRIHTGENCECRVCGKLVRSRTLARFAERPSVPGSISGSMGARTPARSLTNAHTAGRDSLKKELSLLISGPTGRPPTPSDYSSFDSPFSHSTDISLPLLQSLRLGIGAIRKTTKKVSESNHSAEVHSLRLNLRAALDSEKSQSQMEREEEEEEEEEEEVVVVVEQGQGEGAEGFSDAVGGTAAPRCDPPAIVRFGRSLQEGYGGTHECEICGISFHGKLQLNKHRLGHAKMSSQKKRKKQKKQAQKHKLSKIRNSQEKCAQGPIECNICQKVFKKKKYLNVHMTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHTNEKPCTCEICHKSFGNRVYLRSHMKIHSRPETRKRYKCEICSFETFYSYCYKEHMWTHTGESQVPCEVCGKLIRRQYMKIHIRIHTGEKPEVCEFCGKAFSSRKYLIKHRRTHTGERPYKCNICEKRFTQRGTLSAHLRRHDSPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00252244;
- 90% Identity
- -
- 80% Identity
- -