Basic Information

Insect: Trachelus troglodyta
Gene Symbol: -
Assembly: GCA_030142635.1
Location: JARQTJ010000420.1:132625-137608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6.2e-05 0.0046 17.5 0.7 2 23 66 87 65 87 0.96

2 20 0.0067 0.5 11.1 0.2 1 23 102 124 102 124 0.98

3 20 0.31 23 5.8 3.8 1 23 130 153 130 153 0.96

4 20 6.1e-06 0.00046 20.6 1.2 1 23 159 181 159 181 0.98

5 20 0.0011 0.082 13.5 0.9 1 23 185 207 185 207 0.98

6 20 2.3e-06 0.00017 22.0 0.7 3 23 215 235 213 235 0.97

7 20 1.2e-06 9.1e-05 22.8 0.5 1 23 241 263 241 263 0.98

8 20 0.015 1.1 9.9 1.6 1 23 270 292 270 292 0.98

9 20 5.9e-06 0.00044 20.7 0.1 1 23 297 319 297 319 0.99

10 20 6.4e-06 0.00048 20.6 0.6 1 23 325 347 325 347 0.96

11 20 4.5e-07 3.3e-05 24.2 1.2 1 22 353 374 353 374 0.96

12 20 0.00024 0.018 15.6 1.0 1 23 464 487 464 487 0.94

13 20 8e-06 0.00059 20.3 1.0 2 23 521 542 520 542 0.96

14 20 0.00022 0.016 15.8 2.2 1 23 546 568 546 568 0.97

15 20 0.00018 0.013 16.0 1.0 3 23 576 596 575 596 0.97

16 20 1.8e-05 0.0014 19.1 4.5 2 23 603 624 602 624 0.96

17 20 2.1 1.6e+02 3.2 4.3 1 23 633 655 633 655 0.88

18 20 0.13 9.4 7.1 0.1 2 23 662 682 661 682 0.94

19 20 7.2e-07 5.3e-05 23.6 1.3 2 23 689 710 689 710 0.97

20 20 2.4e-07 1.8e-05 25.1 1.5 1 23 716 738 716 738 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6.2e-05	0.0046	17.5	0.7	2	23	66	87	65	87	0.96
2	20	0.0067	0.5	11.1	0.2	1	23	102	124	102	124	0.98
3	20	0.31	23	5.8	3.8	1	23	130	153	130	153	0.96
4	20	6.1e-06	0.00046	20.6	1.2	1	23	159	181	159	181	0.98
5	20	0.0011	0.082	13.5	0.9	1	23	185	207	185	207	0.98
6	20	2.3e-06	0.00017	22.0	0.7	3	23	215	235	213	235	0.97
7	20	1.2e-06	9.1e-05	22.8	0.5	1	23	241	263	241	263	0.98
8	20	0.015	1.1	9.9	1.6	1	23	270	292	270	292	0.98
9	20	5.9e-06	0.00044	20.7	0.1	1	23	297	319	297	319	0.99
10	20	6.4e-06	0.00048	20.6	0.6	1	23	325	347	325	347	0.96
11	20	4.5e-07	3.3e-05	24.2	1.2	1	22	353	374	353	374	0.96
12	20	0.00024	0.018	15.6	1.0	1	23	464	487	464	487	0.94
13	20	8e-06	0.00059	20.3	1.0	2	23	521	542	520	542	0.96
14	20	0.00022	0.016	15.8	2.2	1	23	546	568	546	568	0.97
15	20	0.00018	0.013	16.0	1.0	3	23	576	596	575	596	0.97
16	20	1.8e-05	0.0014	19.1	4.5	2	23	603	624	602	624	0.96
17	20	2.1	1.6e+02	3.2	4.3	1	23	633	655	633	655	0.88
18	20	0.13	9.4	7.1	0.1	2	23	662	682	661	682	0.94
19	20	7.2e-07	5.3e-05	23.6	1.3	2	23	689	710	689	710	0.97
20	20	2.4e-07	1.8e-05	25.1	1.5	1	23	716	738	716	738	0.99

Sequence Information

Coding Sequence: ATGGATTCTCTCATGACTGTGAAAACGCAGGCCTTAACTATTTCCAGCGTTGATTTTAACGCCGGTGATGCAGCTACCTTAGAGATTTTGCAATCCGGAATGCGGATGCTGTGTGCCTTAGTTCCTAAATATCAACCGTCCTTTCACAAATCGCGCGAGATTCGGAATCCTTCGCGAGAATCGGACAGCCGGCTCGTCTGCGACTTCTGCGACAGGTCCTTTAGCGAGAGGGGCGAGCTGCACGCTCATCGTCGTGCTCACAAGCCGACCTACATCCCGGAGAACGAGCAAGAGCCGGCGATGTACGAGTGCGACTTTTGTGGGATGCGAATTCGCCTGAAGGACGCGTTTGCCGAACACAGGCGCATTCACACCGGCGAGGAGCCCTATCGGTGCCAGAGCTGCGAGCAGCGATTTGCTACGCATCAGAGACTCTACTATCACAGAATTCGCGAGCACATCCAGGAGAAGCCCTTCTACTGCAAGGTCTGCGGCAAAGCCTTCAAGCTTCGACAGTTCCTTAACGTCCACATGAAAATACACGATAAGGTTTTCATCTGCGACGTCTGCGGCGCTTCGACGGCTACGCTCTGCAATCTTGAGTATCACAGAAAGCGGCACAACAAGGAGTACGATCTCTTCTGTGAGATATGCACCAAGGGCTTCTACACGAAGGCCAGCCTTCAGCAGCACATGATGACGCACTCGGGCGAGAAGCCCTTTCCCTGTCCAACCTGTGGCTCCTCCTTCAGCAGCCGAAGCTACCTCAAACTGCACATGGCGAAGCACGGAACCCGCGAGAAGAAGTACACCTGCGAATTCTGCGATTTTCGGAGCTGCTGGCGCGGCGCCCTCAAGGTCCACATGCGAATTCATACTGGGGAGAATTACGAGTGTCGCGTGTGCGGCAAATCGGTCTCCAGCAAAGCCTACCTGGGCATCCATATGCGCATTCACACGGGTGAGAAGCCGCACGCTTGCGAGATTTGCGGAAAGGCCTTCAGTGCCAGGAAGTATCTCAGGATACATGCGCGCACGCACACCGGCGAGAAGCCTTACGAATGCCCACACTGCCAGAAGAGATTCACTCAAAAAGGAACGCTCACTGCTCATCTCAGGCGTTTGGGGATAGGCGCTATAAGAAAGACGACAAAGAAGGTGAGTGAATCGAATCATTCGGCAGAAGTCCACTCTCTCCGGTTGAACCTTCGAGCAGCTTTGGATAGCGAGAAGAGTCAGTGtcagagggagagggaggaggTGGAGCAGGCGCAGGGGCAAGGAGCGAAGGGGTTTTCTGATGCTGTCGGGGGCACGGCGGGTCCTCAGTGCGATCCTCCTGCGATCGTGCTCTTCGGTAGGAGCCTTCAGGAGGGATACGCCGGGACACACGAGTGCGAAATATGCGGTATAAGCTTCCACGGTAAACCTCAGCTGAATAAGCACAGGCTGCTGGGGCACGTGAAGATGTCTTCgcaaaagaagcaaaagaagaaAGCGCAAAAACACAAGCTttcgaaaatacgaaatagCCAAGAAAAGTGTTCCCAGGGTCCGATCGAGTGCAACGTCTGTCAGaaagttttcaaaaagaagaagTACTTGAATGTCCACATGACTCTTCACGGAGCGCCTCATATATGTCATGTTTGCGGCGCGAAGCTCACTTCCGAGTATTATTTGAAGATCCACATAAGACGGCACAACAAAGAATTTACGGAATTTTGTAAAGTTTGCAACAAGGGATTCTACCTGAAGGCCACTCTGAAAACGCACATGAGCGTTCACACGGACGAGAAGCCGTGCACGTGCGAGATTTGCCACAAGTCTTTCGGGAATCGTGTTTATCTCAGGAGCCACATGAAGATCCACAGCAGACCGGAAACAAGGAAAAGATACAAGTGCGAGATATGCAGCTTCGAAACGTTTTACAGTTATTGTTACAAGGAACACATGTGGACACACACTGGCGAGAGTCAAGTGCCCTGCGAAGTATGTGGAAAGCTCATTCGTCGGCAGTACATGAAGATTCACATTAGAATTCACACCGGCGAGAAGCCCGAGGTCTGTGAGTTTTGCGGGAAAGCCTTCAGCTCGCGGAAGTACTTGATAAAGCACAGAAGGACGCACACTGGCGAGAGACCCTACAAGTGTAACATTTGTGAGAAAAGATTCACTCAGCGTGGAACTCTGAGCGCACACCTCAGACGCCACGATAATCCAAAATGA
Protein Sequence: MDSLMTVKTQALTISSVDFNAGDAATLEILQSGMRMLCALVPKYQPSFHKSREIRNPSRESDSRLVCDFCDRSFSERGELHAHRRAHKPTYIPENEQEPAMYECDFCGMRIRLKDAFAEHRRIHTGEEPYRCQSCEQRFATHQRLYYHRIREHIQEKPFYCKVCGKAFKLRQFLNVHMKIHDKVFICDVCGASTATLCNLEYHRKRHNKEYDLFCEICTKGFYTKASLQQHMMTHSGEKPFPCPTCGSSFSSRSYLKLHMAKHGTREKKYTCEFCDFRSCWRGALKVHMRIHTGENYECRVCGKSVSSKAYLGIHMRIHTGEKPHACEICGKAFSARKYLRIHARTHTGEKPYECPHCQKRFTQKGTLTAHLRRLGIGAIRKTTKKVSESNHSAEVHSLRLNLRAALDSEKSQCQREREEVEQAQGQGAKGFSDAVGGTAGPQCDPPAIVLFGRSLQEGYAGTHECEICGISFHGKPQLNKHRLLGHVKMSSQKKQKKKAQKHKLSKIRNSQEKCSQGPIECNVCQKVFKKKKYLNVHMTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCKVCNKGFYLKATLKTHMSVHTDEKPCTCEICHKSFGNRVYLRSHMKIHSRPETRKRYKCEICSFETFYSYCYKEHMWTHTGESQVPCEVCGKLIRRQYMKIHIRIHTGEKPEVCEFCGKAFSSRKYLIKHRRTHTGERPYKCNICEKRFTQRGTLSAHLRRHDNPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00252244;
90% Identity: iTF_00253750;
80% Identity: -