Basic Information

Insect: Calameuta pallipes
Gene Symbol: -
Assembly: GCA_030142375.1
Location: JARQSW010000427.1:127181-132249[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0014 0.11 13.2 0.1 2 23 66 87 65 87 0.96

2 20 0.072 5.6 7.8 0.2 1 23 102 124 102 124 0.98

3 20 0.036 2.8 8.8 3.5 1 23 130 153 130 153 0.96

4 20 1.4e-05 0.0011 19.5 1.3 1 23 159 181 159 181 0.97

5 20 0.0022 0.17 12.6 1.0 1 23 185 207 185 207 0.97

6 20 2e-05 0.0016 19.0 0.7 3 23 215 235 213 235 0.96

7 20 3.2e-05 0.0025 18.4 0.2 1 23 241 263 241 263 0.98

8 20 0.14 11 6.9 1.0 1 23 270 292 270 292 0.95

9 20 5.9e-06 0.00046 20.7 0.1 1 23 297 319 297 319 0.99

10 20 1.1e-05 0.00088 19.8 0.7 1 23 325 347 325 347 0.96

11 20 0.00025 0.02 15.6 1.4 3 21 355 373 353 374 0.95

12 20 0.00059 0.046 14.4 2.8 1 23 464 486 464 486 0.96

13 20 1.1e-05 0.00086 19.8 2.4 2 23 523 544 522 544 0.96

14 20 0.00022 0.017 15.8 2.2 1 23 548 570 548 570 0.97

15 20 0.00018 0.014 16.0 1.0 3 23 578 598 577 598 0.97

16 20 1.8e-05 0.0014 19.1 4.5 2 23 605 626 604 626 0.96

17 20 2.1 1.7e+02 3.2 4.3 1 23 635 657 635 657 0.88

18 20 0.13 9.9 7.1 0.1 2 23 664 684 663 684 0.94

19 20 7.2e-07 5.7e-05 23.6 1.3 2 23 691 712 691 712 0.97

20 20 2.9e-07 2.3e-05 24.8 1.9 1 23 718 740 718 740 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0014	0.11	13.2	0.1	2	23	66	87	65	87	0.96
2	20	0.072	5.6	7.8	0.2	1	23	102	124	102	124	0.98
3	20	0.036	2.8	8.8	3.5	1	23	130	153	130	153	0.96
4	20	1.4e-05	0.0011	19.5	1.3	1	23	159	181	159	181	0.97
5	20	0.0022	0.17	12.6	1.0	1	23	185	207	185	207	0.97
6	20	2e-05	0.0016	19.0	0.7	3	23	215	235	213	235	0.96
7	20	3.2e-05	0.0025	18.4	0.2	1	23	241	263	241	263	0.98
8	20	0.14	11	6.9	1.0	1	23	270	292	270	292	0.95
9	20	5.9e-06	0.00046	20.7	0.1	1	23	297	319	297	319	0.99
10	20	1.1e-05	0.00088	19.8	0.7	1	23	325	347	325	347	0.96
11	20	0.00025	0.02	15.6	1.4	3	21	355	373	353	374	0.95
12	20	0.00059	0.046	14.4	2.8	1	23	464	486	464	486	0.96
13	20	1.1e-05	0.00086	19.8	2.4	2	23	523	544	522	544	0.96
14	20	0.00022	0.017	15.8	2.2	1	23	548	570	548	570	0.97
15	20	0.00018	0.014	16.0	1.0	3	23	578	598	577	598	0.97
16	20	1.8e-05	0.0014	19.1	4.5	2	23	605	626	604	626	0.96
17	20	2.1	1.7e+02	3.2	4.3	1	23	635	657	635	657	0.88
18	20	0.13	9.9	7.1	0.1	2	23	664	684	663	684	0.94
19	20	7.2e-07	5.7e-05	23.6	1.3	2	23	691	712	691	712	0.97
20	20	2.9e-07	2.3e-05	24.8	1.9	1	23	718	740	718	740	0.99

Sequence Information

Coding Sequence: ATGGATTCTCTCATGACTGTGAAAACGCAGGCCTTAACTATTTCTAGCGTTGATTTTAACGCCGATGATGCAGCTACCTTTGAGATTTGGCAATCCGGGATGCGGATGCTGTGTGCCTTAGTTCCTAAACATCAACCGTCCCTTCGCAAATCGCGCGAGATTCGGAATCCTTCGCGCAAATCGGACAGCCGGCTCGTCTGCGACCTCTGCTCAGGGTCCTTCAGCGAGAGGGGCGAGCTGCAAGCGCATCGTCGCGCTCACAGGCCGACCTACATCCCGGAGGACCGGCAAGAGCCGGCGATGTACGAGTGCGACTTTTGTGGGTTGCGAATCCGCCTGAAGGACGTGTTTGCCGAGCACAGGCGCATCCACACCGGCGAGGAGCCTTATCGGTGCCAGAGCTGCGGGCAGCGATTTGCCACGCATCAGAGGCTCTACTATCACAGAATTCGCGAGCACATCCAGGAGAAACCCTTCTTCTGCAAGGTCTGCGGCAAAGCCTTCAAGCTCCGACAGTTCCTTAACGTCCACATGAAAATACACGACAAGGTTTTCATCTGCGACGTCTGCGGCGCTTCGACCGCTACGCTCTGCAATCTTGAGTATCACAAAAAGCGGCACAACAAGGACTACGAGCTCTTCTGCGAGATCTGCACCAAGGGCTTCTACACGAAGTCCAGCCTCCGGCAGCACGCGATTACGCACTCGGGCGAGAAGCCCTTCCCCTGCCCCACCTGCGGCTCCTCCTTCGGCAGCCGAGGCTACCTGAAGCTCCACATGGCGAAGCACGGAACCCGCGAGAAGAAGTTCGCCTGCGAATTCTGCGAGTTTCGGAGCTGCTGGCGCGGCGCCCTCAAGGTTCACATGCGAATTCACACCGGGGAGAATTACGAGTGTCGCGTGTGCGGGAAATCGGTATCCAGTAAGGCCTACCTGGGCATCCACATGCGGATCCACACGGGCGAGAAGCCGCACGCTTGCGAGATCTGCGGAAAGGCCTTCAGTGCCAGGAAGTATCTCAGGATTCACGGGCGGACGCACACCGGCGAGAAGCCTTACGGATGCTCCTTCTGCCAGAAGAGATTCACTCAAAGAGGGACGCTCACTGCTCACCTCAGGCATTTGGGGATAGGCGCTATAAGAAAAACGGCAAAGAAGGTGAGTGTATCGAATCATTCGGCAGAAGTCTACTCTCTCCGGTTGAACCTTCGAGCAGCTTTGGATAGCGAGAAGAGTcagagggaggaggaggaggaggatgaggatgtggaggtggtggaggggCAGGGAGCGGAGGGGTTTTCCGACGCTGTCGGAGGCACGGGTCCTCGGTGCGATCCTGGGATCGTGCGCTTCGGTAGGAGCCTTCAGGAGGGATACGGCGGGACGCACCAGTGCGAAATATGCGGTACAAGCTTCCACGGGAAACTTCAGCTGAATAAGCATCGACTGGGGCACGCGAAGGTGTCTTCgcaaaagaagcaaaagaagcaaaagaagCAGGCGCAAAGACACAAGCTTTCGAAAATGCGAAATGCCCAAGAGAAGTGTTCCCAGGGTCCGATCGAGTGCAACGTCTGTCACAAAGtcttcaagaagaagaagtactTGAACGTCCACATGACTCTTCACGGAGCGCCTCATATATGTCACGTGTGCGGCGCGAAGCTCACTTCCGAGTATTATTTGAAGATCCACATAAGACGGCACAACAAAGAATTCACGGAATTTTGTAAAGTCTGCAACAAGGGATTCTACCTGAAGGCGACGCTGAAGACGCACATGAGCGTCCACACGGACGAGAAGCCGTGCACCTGCGAGATTTGCCACAAGTCCTTCGGGAATCGCGTTTACCTCAGGAGCCACATGAAGATCCACAGCAGACCGGAGACTAGGAAAAGATACAAATGCGAGATATGCAGCTTCGAAACGTTTTACAGTTATTGCTACAAGGAGCACATGTGGACGCACACTGGGGAGAGTCAAGTGCCCTGCGAAGTATGTGGAAAGCTCATTCGTCGGCAGTACATGAAGATTCACATTAGAATTCACACTGGCGAGAAGCCGGAGGTCTGTGAATTTTGCGGAAAAGCTTTCAGCTCGCGAAAGTACTTGATCAAGCACAGAAGGACGCACACTGGCGAGAGACCCTACAAGTGTAAGATCTGCGAGAAAAGATTTACTCAGCGTGGAACTCTGAGCGCGCACCTCAGGCGCCACGATAATCCAAAATGA
Protein Sequence: MDSLMTVKTQALTISSVDFNADDAATFEIWQSGMRMLCALVPKHQPSLRKSREIRNPSRKSDSRLVCDLCSGSFSERGELQAHRRAHRPTYIPEDRQEPAMYECDFCGLRIRLKDVFAEHRRIHTGEEPYRCQSCGQRFATHQRLYYHRIREHIQEKPFFCKVCGKAFKLRQFLNVHMKIHDKVFICDVCGASTATLCNLEYHKKRHNKDYELFCEICTKGFYTKSSLRQHAITHSGEKPFPCPTCGSSFGSRGYLKLHMAKHGTREKKFACEFCEFRSCWRGALKVHMRIHTGENYECRVCGKSVSSKAYLGIHMRIHTGEKPHACEICGKAFSARKYLRIHGRTHTGEKPYGCSFCQKRFTQRGTLTAHLRHLGIGAIRKTAKKVSVSNHSAEVYSLRLNLRAALDSEKSQREEEEEDEDVEVVEGQGAEGFSDAVGGTGPRCDPGIVRFGRSLQEGYGGTHQCEICGTSFHGKLQLNKHRLGHAKVSSQKKQKKQKKQAQRHKLSKMRNAQEKCSQGPIECNVCHKVFKKKKYLNVHMTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCKVCNKGFYLKATLKTHMSVHTDEKPCTCEICHKSFGNRVYLRSHMKIHSRPETRKRYKCEICSFETFYSYCYKEHMWTHTGESQVPCEVCGKLIRRQYMKIHIRIHTGEKPEVCEFCGKAFSSRKYLIKHRRTHTGERPYKCKICEKRFTQRGTLSAHLRRHDNPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00252244;
90% Identity: iTF_00253750;
80% Identity: -