Basic Information

Insect: Bombus confusus
Gene Symbol: -
Assembly: GCA_014737475.1
Location: JACXIV010000015.1:2036206-2039318[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3e-06 0.00023 21.2 0.3 1 23 18 40 18 40 0.97

2 19 1.8e-05 0.0014 18.8 1.4 1 23 46 68 46 68 0.97

3 19 0.0015 0.12 12.7 0.6 1 23 74 96 74 96 0.98

4 19 2.3e-06 0.00018 21.6 7.0 1 23 102 124 102 125 0.96

5 19 0.00056 0.044 14.1 2.7 1 23 141 164 141 164 0.96

6 19 0.0052 0.4 11.0 0.5 3 23 174 194 172 194 0.95

7 19 6.1e-07 4.7e-05 23.4 0.4 2 23 201 222 200 222 0.98

8 19 9.9e-06 0.00077 19.6 1.0 3 23 230 250 228 250 0.97

9 19 3.6e-07 2.8e-05 24.1 0.5 1 23 256 278 256 278 0.99

10 19 0.094 7.3 7.1 0.7 2 23 322 344 321 344 0.96

11 19 1e-05 0.00079 19.6 0.9 1 23 350 373 350 373 0.97

12 19 0.058 4.5 7.7 0.5 2 23 379 400 378 401 0.94

13 19 3e-05 0.0023 18.1 0.3 1 23 406 428 406 428 0.97

14 19 0.00018 0.014 15.6 0.5 2 23 435 457 434 457 0.94

15 19 5.8e-05 0.0044 17.2 2.1 1 23 479 502 479 502 0.93

16 19 0.0019 0.14 12.4 0.1 1 23 513 535 513 535 0.95

17 19 0.0072 0.56 10.6 3.6 1 23 541 563 541 563 0.94

18 19 4.5e-07 3.4e-05 23.8 1.1 1 23 569 591 569 591 0.98

19 19 1.5e-05 0.0012 19.0 0.1 1 21 597 617 597 618 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3e-06	0.00023	21.2	0.3	1	23	18	40	18	40	0.97
2	19	1.8e-05	0.0014	18.8	1.4	1	23	46	68	46	68	0.97
3	19	0.0015	0.12	12.7	0.6	1	23	74	96	74	96	0.98
4	19	2.3e-06	0.00018	21.6	7.0	1	23	102	124	102	125	0.96
5	19	0.00056	0.044	14.1	2.7	1	23	141	164	141	164	0.96
6	19	0.0052	0.4	11.0	0.5	3	23	174	194	172	194	0.95
7	19	6.1e-07	4.7e-05	23.4	0.4	2	23	201	222	200	222	0.98
8	19	9.9e-06	0.00077	19.6	1.0	3	23	230	250	228	250	0.97
9	19	3.6e-07	2.8e-05	24.1	0.5	1	23	256	278	256	278	0.99
10	19	0.094	7.3	7.1	0.7	2	23	322	344	321	344	0.96
11	19	1e-05	0.00079	19.6	0.9	1	23	350	373	350	373	0.97
12	19	0.058	4.5	7.7	0.5	2	23	379	400	378	401	0.94
13	19	3e-05	0.0023	18.1	0.3	1	23	406	428	406	428	0.97
14	19	0.00018	0.014	15.6	0.5	2	23	435	457	434	457	0.94
15	19	5.8e-05	0.0044	17.2	2.1	1	23	479	502	479	502	0.93
16	19	0.0019	0.14	12.4	0.1	1	23	513	535	513	535	0.95
17	19	0.0072	0.56	10.6	3.6	1	23	541	563	541	563	0.94
18	19	4.5e-07	3.4e-05	23.8	1.1	1	23	569	591	569	591	0.98
19	19	1.5e-05	0.0012	19.0	0.1	1	21	597	617	597	618	0.96

Sequence Information

Coding Sequence: ATGAGGAAGCTGGTAGAACACCTGAAGAACCTCCACGGCATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAAACTTTCAGAAGTCCCATGAACATAGCTCGTCACAAATTAATTCACACTGGTTCCAAAAGATTCGCTTGCGACTTATGCGACTATAGATCGAACCAAAAGTCAAACCTCGAGAGCCATCGTCGAAGACACACGAAAGACTATTCCTTTAAATGCGAACAATGCGAGAAAGGCTTCTTCCTGAGAACAGAATACTTGGAACATATAAATGTTCATACCAGGAAGCAATTGTACAAATGTGACCACTGTAGCAAGTCATATCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTGTCTCGCAGTTAGAATTAAGAAATGACGCGACAAAGAAGCACGTGTGCACAATTTGCCTGGAGAGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGATTGTACGAGAAAATGAAGCATTTATGCGATGTGTGCGGGGCAGTGTTGTCTTCGAAGAGGAGGTTGATGGTGCATAGGCGGGGCCACGTTAACGAGAAGATCGTGAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGTGAGAAACCATACGGTTGCTCGCAGTGTGGAAGAAGGTTTACACAGAGGACTTCTTTGATATTACATCTTAGGTACCATTCCGGGGAAAGGCCGTATCAATGCGTGGATTGCGGGAAGGGATTCGTTTCTGCGAGTTTCCTGAAGAAACATCGAAAGATTCATGAGAAAACTACGCAACTCGAAACCCACTGGGGCAACGATCGCGACGAGCTTAGCAGCTGCGAAGATTTCAGAATCAAGAAGGAGGATATTCTTCTCGATCCTGGACAAAAGTTCGAGGGGAACGAGAAAGTCTGCGACCTTTGTCAAGAAAAGTTCCACTTCGTAACCAGATTGGTAGCTCATCTGAGGATCGTCCACGGTATCCATAGACCCTTCAAATGTGTCACGTGTGGGAAGACATACCCGCAGCAGTTTATGCTAAACGCCCACGTGAAAAAATCTCACACTCCTAAAACGATCCCCTGCACTGAATGCAGTTTCATGGGGGTGAACGCCACTGACGTGGAAAGACACACGAAACGACATCATCGAGAAATAAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCCTTGATGACTCACACAACTATACATAACTTTATGCAGTTTCAACAATGTAACGCTTGTGGTACCACGTTCAACGACGCGTACAGCCTAAAGGAGCACAACCGATTGTACCACTACGATCCAGCAACGTTGATTCAAGAAAAGCTCGAAGCTGACAGTCCGCAGAACACCACGGAGCACAAGTGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGGCGATATGCCAAATTACGAGAGACGTCGATATTTATGCGCTCTTTGCGGCAAAGAATTAAAAACCGCGAAAGGCCTGGAAATTCACAATCGATCGCACACCGGTGAAAAACCTTACACCTGCGAGGTGTGTGGCAAGTGTTTCGCCTGCGAAACACTGCTCAGGACTCATAATGTCACGCACACCGGCGAGAGAAAGTATTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTATGTTTGTCCTCGATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCACATGAAGTCCTGCCGTTGA
Protein Sequence: MRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGSKRFACDLCDYRSNQKSNLESHRRRHTKDYSFKCEQCEKGFFLRTEYLEHINVHTRKQLYKCDHCSKSYPYKKNLTNHLRTHHASVSQLELRNDATKKHVCTICLESFTRKLFLERHLKQRHGLYEKMKHLCDVCGAVLSSKRRLMVHRRGHVNEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRRFTQRTSLILHLRYHSGERPYQCVDCGKGFVSASFLKKHRKIHEKTTQLETHWGNDRDELSSCEDFRIKKEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTIPCTECSFMGVNATDVERHTKRHHREIKFTCEICSENFVDKDSLMTHTTIHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPATLIQEKLEADSPQNTTEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00224694; iTF_00218566; iTF_00226054; iTF_00225378; iTF_00221397; iTF_00228813; iTF_00224018; iTF_00229491; iTF_00219253; iTF_00223332; iTF_00215159; iTF_00226735; iTF_00227412;
80% Identity: -