Bpic007991.1
Basic Information
- Insect
- Bombus picipes
- Gene Symbol
- -
- Assembly
- GCA_014737485.1
- Location
- JACXIP010000011.1:12350771-12354126[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1 2.1e+02 2.9 7.1 1 23 30 53 30 53 0.92 2 19 3.1e-06 0.00031 21.2 0.3 1 23 59 81 59 81 0.97 3 19 3.5e-05 0.0035 17.9 1.7 1 23 87 109 87 109 0.97 4 19 0.0015 0.16 12.7 0.6 1 23 115 137 115 137 0.98 5 19 2.3e-06 0.00024 21.6 7.0 1 23 143 165 143 166 0.96 6 19 0.0017 0.18 12.6 2.1 1 23 182 205 182 205 0.96 7 19 0.0068 0.69 10.7 0.7 3 23 215 235 213 235 0.95 8 19 1.2e-06 0.00012 22.5 0.3 2 23 242 263 241 263 0.97 9 19 0.00036 0.036 14.7 0.7 3 20 271 288 269 290 0.94 10 19 0.095 9.6 7.1 0.7 2 23 325 347 324 347 0.96 11 19 1.1e-05 0.0011 19.6 0.9 1 23 353 376 353 376 0.97 12 19 0.06 6 7.7 0.5 2 23 382 403 381 404 0.94 13 19 3.8e-05 0.0039 17.8 0.4 1 23 409 431 409 431 0.97 14 19 0.00019 0.019 15.6 0.5 2 23 438 460 437 460 0.94 15 19 5.9e-05 0.006 17.2 2.1 1 23 482 505 482 505 0.93 16 19 0.0019 0.19 12.4 0.1 1 23 516 538 516 538 0.95 17 19 0.0075 0.75 10.6 3.6 1 23 544 566 544 566 0.94 18 19 4.6e-07 4.6e-05 23.8 1.1 1 23 572 594 572 594 0.98 19 19 4.2e-05 0.0043 17.6 0.2 1 21 600 620 600 621 0.96
Sequence Information
- Coding Sequence
- ATGTATAACGTGTACGAGATTCTAATAAAATTTCATTGCACACCATCGTATATCGGTAGATCGCGAAGAGCAATTTCTCGAGCAATTCACGAATGCATCAAATGTGGAGCCTGCTTCTGTCACATGAGGAAGCTGGTAGAACACCTGAAGAACCTCCATGGTATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAAACTTTCAGAAGTCCCATGAACATAGCCCGTCACAAATTAATTCACACTGGTTTCAAAAGATTCGCTTGCGACTTATGCAACTATAGATCAAACCAAAAGTCAAACCTCGAGAGCCATCGTCGAAGACACACCAAAGACTATTCCTTTAAATGCGAACAATGTGAAAAAGGCTTCTTCCTGAGAACAGAATACTTAGAACATATAAATGTTCATACTAGGAAGCAATTGTACAAATGTGATCACTGTAGCAAGTCATACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTGTCTCGCAGTTAGAATTAAGAAATGACGTGACAAAGAAGCACGTGTGCACAATTTGCCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGTTTGTACGAGAAAATGAAGCATTTATGCGATCTATGCGGGGCAGTGTTATCTACCAAGAGGAGGTTGATGGTGCATAGGCGGGGCCACGTTAACGAGAAGATCGTAAAATGCGGTTTATGCGACAAACAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCATACGGTTGCTCGCAGTGTGGAAGAAGGTTTACACAGAGGACTTCTTTGATATTACATCTTAGCCACTGGGACAACGATCACGATGTGCTTAGCAGCTGCGAAGATTTCAGAATCAAGAACGAGGATATTCTTCTCGATCCTGGACAAAAGTTCGAGGGGAACGAGAAAGTCTGCGAGCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATCGTTCACGGTATCCATAGACCCTTCAAATGTGTCACGTGTGGGAAGACATATCCGCAGCAGTTTATGCTAAACGCCCATGTGAAAAAATCTCACACTCCTAAAACGATCCCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCGACTGATGTGGAAAGACATACGAAACGACACCATCGAGAAATGAAGTTCAGCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCCTTGATGACACACACAACTATGCATAACTTTATGCAGTTTCAACAATGTAACGCTTGTGGTACTACGTTCAACGACGCGTACAGCCTAAAGGAGCATAACCGTTTGTACCACTACGATCCAACAACGTTGATTCAAGAGAAGCTCGAAGCTGACAGTCCGCAGAACACCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGGTGATATGCCAAATTACGAAAGACGTCGATATTTATGCGCTCTTTGCGGGAAAGAATTAAAAACCGCAAAAGGTCTCGAAATTCACAATCGATCGCACACCGGCGAAAAGCCTTATACCTGCGAGGTGTGTGGCAAGTGTTTCGCCTGTGAAACATTGCTCAGGACTCATAATGTCACACACACTGGCGAGAGAAAGTATTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTATGTTTGTTCTCGATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCACATGAAGTCCTGTCGTTGA
- Protein Sequence
- MYNVYEILIKFHCTPSYIGRSRRAISRAIHECIKCGACFCHMRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGFKRFACDLCNYRSNQKSNLESHRRRHTKDYSFKCEQCEKGFFLRTEYLEHINVHTRKQLYKCDHCSKSYPYKKNLTNHLRTHHASVSQLELRNDVTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSTKRRLMVHRRGHVNEKIVKCGLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRRFTQRTSLILHLSHWDNDHDVLSSCEDFRIKNEDILLDPGQKFEGNEKVCELCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTIPCTECSFMGVNATDVERHTKRHHREMKFSCEICSENFVDKDSLMTHTTMHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLEADSPQNTTEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCSRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361060;
- 90% Identity
- iTF_00216535;
- 80% Identity
- -