Bmus018132.1
Basic Information
- Insect
- Bombus muscorum
- Gene Symbol
- -
- Assembly
- GCA_963971185.1
- Location
- OZ020138.1:3180299-3183613[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.6 2.9e+02 2.8 7.1 1 23 60 83 60 83 0.92 2 19 3.9e-06 0.00043 21.2 0.3 1 23 89 111 89 111 0.97 3 19 2.4e-05 0.0026 18.7 1.4 1 23 117 139 117 139 0.97 4 19 0.0019 0.21 12.7 0.6 1 23 145 167 145 167 0.98 5 19 2.9e-06 0.00033 21.5 7.0 1 23 173 195 173 196 0.96 6 19 0.0022 0.24 12.5 2.1 1 23 212 235 212 235 0.96 7 19 0.0052 0.57 11.3 1.0 3 23 245 265 243 265 0.96 8 19 7.9e-07 8.8e-05 23.3 0.4 2 23 272 293 271 293 0.98 9 19 0.00045 0.05 14.6 0.7 3 20 301 318 299 320 0.94 10 19 0.12 14 7.0 0.7 2 23 355 377 354 377 0.96 11 19 1.3e-05 0.0015 19.5 0.9 1 23 383 406 383 406 0.97 12 19 0.075 8.3 7.7 0.5 2 23 412 433 411 434 0.94 13 19 3.1e-05 0.0035 18.3 0.5 1 23 439 461 439 461 0.98 14 19 0.00024 0.026 15.5 0.5 2 23 468 490 467 490 0.94 15 19 7.4e-05 0.0082 17.1 2.1 1 23 512 535 512 535 0.93 16 19 0.0024 0.27 12.3 0.1 1 23 546 568 546 568 0.95 17 19 0.0094 1 10.5 3.6 1 23 574 596 574 596 0.94 18 19 5.8e-07 6.4e-05 23.8 1.1 1 23 602 624 602 624 0.98 19 19 2e-05 0.0022 18.9 0.1 1 21 630 650 630 651 0.96
Sequence Information
- Coding Sequence
- ATGGTAAAACTTAACGAAGAACAACAAAAATCATCGCAGAAGAACATTCATTCTAAACAAATAAGTACCATAATAGTTCCACGTAGTTGCACATTTATTCCCTCATTATCTAAATTACTTCGTGCACTTCATCGTTGTTTCTGTTTCAGATCGCGAAGAGCAATTTCTCGAGCAATTCACGAATGCATCAAATGTGGAGCCTGCTTCTGTCACATGAGGAAGCTGGTAGAACACCTGAAGAACCTCCATGGTATCGACAGAGCCTTCAGCTGCGACGAATGTGGCAAAACTTTCAGAAGTCCCATGAACATAGCTCGTCATAAATTAATTCACACTGGTTTCAAAAGATTCGCTTGCGACTTATGCGATTATAGATCAAACCAAAAGTCAAACCTCGAGAGCCATCGTCGAAGACACACCAAAGACTATTCATTTAAATGCGAACAATGTGAAAAAGGCTTCTTCCTGAGAACAGAATACTTGGAACATATAAATGTTCATACTAGGAAGCAATTGTACAAATGTGATCACTGTAGCAAGTCATACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTGTCTCGCAGTTAGAATTAAGAAATGACGTGACAAAGAAGCACGTGTGCACAATTTGCCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGTTTGTACGAGAAAATGAAGCATTTATGCGATCTGTGCGGAGCAGTTTTGTCTTCCAAGAGGAGGTTGATGGTGCATAGGCGGAGTCACGTTAACGAGAAGATCGTAAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCGTATGGTTGCTCGCAGTGTGGAAGAAGGTTTACACAGAGGACTTCTTTGATATTACATCTTAGCCACTGGGGCAACGATCACGACGTGCTTAGCAGCTGCGAAGATTTCAGAATCAAGAACGAGGATATTCTTCTCGATCCTGGACAAAAGTTCGAGGGGAACGAGAAAGTCTGCGACCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATCGTCCACGGTATCCATAGACCCTTCAAATGTGTCACGTGTGGGAAGACATATCCGCAGCAGTTTATGCTAAACGCTCATGTGAAAAAATCTCACACTCCTAAAACGATCCCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCCACTGACGTGGAAAGACATACGAAACGACACCATCGAGAAATGAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCCTTGATGACTCACACAACTATGCATAACTTTATGCAGTTTCAACAATGTAACGCTTGTGGTACTACGTTCAACGACGCGTACAGCCTAAAGGAGCACAACCGTTTGTACCACTACGATCCAACAACGTTGATTCAAGAGAAGCTCGAAACTGACAGTCCGCAGAACATCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGGTGATATGCCAAATTACGAGAGACGTCGATATTTGTGCGCTCTTTGCgggaaagaattaaaaaccGCAAAAGGCCTCGAAATTCACAATCGATCGCACACCGGCGAAAAGCCTTACACCTGCGAGGTGTGTGGCAAGTGTTTCGCCTGTGAAACACTGCTCAGGACTCATAATGTCACGCACACTGGCGAGAGAAAGTATTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACTGGCGAACGACCGTATGTTTGTCCTCGATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCATATGAAATCCTGTCGTTGA
- Protein Sequence
- MVKLNEEQQKSSQKNIHSKQISTIIVPRSCTFIPSLSKLLRALHRCFCFRSRRAISRAIHECIKCGACFCHMRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGFKRFACDLCDYRSNQKSNLESHRRRHTKDYSFKCEQCEKGFFLRTEYLEHINVHTRKQLYKCDHCSKSYPYKKNLTNHLRTHHASVSQLELRNDVTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSSKRRLMVHRRSHVNEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRRFTQRTSLILHLSHWGNDHDVLSSCEDFRIKNEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTIPCTECSFMGVNATDVERHTKRHHREMKFTCEICSENFVDKDSLMTHTTMHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLETDSPQNITEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361060;
- 90% Identity
- iTF_00216535;
- 80% Identity
- -