Basic Information

Insect: Bombus ignitus
Gene Symbol: -
Assembly: GCA_014825875.1
Location: CM026146.1:4901133-4904490[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2 2.2e+02 2.9 7.1 1 23 19 42 19 42 0.92

2 19 3e-06 0.00032 21.3 0.3 1 23 48 70 48 70 0.97

3 19 1.3e-05 0.0014 19.3 1.4 1 23 76 98 76 98 0.97

4 19 0.0015 0.16 12.8 0.6 1 23 104 126 104 126 0.98

5 19 2.3e-06 0.00024 21.6 7.0 1 23 132 154 132 155 0.96

6 19 0.0017 0.18 12.6 2.1 1 23 171 194 171 194 0.96

7 19 0.0093 0.98 10.3 0.6 3 23 204 224 202 224 0.95

8 19 6.2e-07 6.6e-05 23.4 0.4 2 23 231 252 230 252 0.98

9 19 0.00035 0.037 14.7 0.7 3 20 260 277 258 279 0.94

10 19 0.096 10 7.1 0.7 2 23 314 336 313 336 0.96

11 19 1e-05 0.0011 19.6 0.9 1 23 342 365 342 365 0.97

12 19 0.07 7.4 7.5 0.9 2 23 371 392 370 393 0.94

13 19 2.4e-05 0.0026 18.4 0.5 1 23 398 420 398 420 0.98

14 19 0.00019 0.02 15.6 0.5 2 23 427 449 426 449 0.94

15 19 5.8e-05 0.0062 17.2 2.1 1 23 471 494 471 494 0.93

16 19 0.0019 0.2 12.5 0.1 1 23 505 527 505 527 0.95

17 19 0.0073 0.78 10.6 3.6 1 23 533 555 533 555 0.94

18 19 4.5e-07 4.8e-05 23.9 1.1 1 23 561 583 561 583 0.98

19 19 1.6e-05 0.0017 19.0 0.1 1 21 589 609 589 610 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2	2.2e+02	2.9	7.1	1	23	19	42	19	42	0.92
2	19	3e-06	0.00032	21.3	0.3	1	23	48	70	48	70	0.97
3	19	1.3e-05	0.0014	19.3	1.4	1	23	76	98	76	98	0.97
4	19	0.0015	0.16	12.8	0.6	1	23	104	126	104	126	0.98
5	19	2.3e-06	0.00024	21.6	7.0	1	23	132	154	132	155	0.96
6	19	0.0017	0.18	12.6	2.1	1	23	171	194	171	194	0.96
7	19	0.0093	0.98	10.3	0.6	3	23	204	224	202	224	0.95
8	19	6.2e-07	6.6e-05	23.4	0.4	2	23	231	252	230	252	0.98
9	19	0.00035	0.037	14.7	0.7	3	20	260	277	258	279	0.94
10	19	0.096	10	7.1	0.7	2	23	314	336	313	336	0.96
11	19	1e-05	0.0011	19.6	0.9	1	23	342	365	342	365	0.97
12	19	0.07	7.4	7.5	0.9	2	23	371	392	370	393	0.94
13	19	2.4e-05	0.0026	18.4	0.5	1	23	398	420	398	420	0.98
14	19	0.00019	0.02	15.6	0.5	2	23	427	449	426	449	0.94
15	19	5.8e-05	0.0062	17.2	2.1	1	23	471	494	471	494	0.93
16	19	0.0019	0.2	12.5	0.1	1	23	505	527	505	527	0.95
17	19	0.0073	0.78	10.6	3.6	1	23	533	555	533	555	0.94
18	19	4.5e-07	4.8e-05	23.9	1.1	1	23	561	583	561	583	0.98
19	19	1.6e-05	0.0017	19.0	0.1	1	21	589	609	589	610	0.96

Sequence Information

Coding Sequence: ATGTCATTGCACACCATCGAATATCGATCGCGAAGAGCAATTTCTCGAGCAATTCACGAATGCATTAAATGTGGAGCCTGCTTCTGTCACATGAGGAAGCTGGTAGAACACCTGAAGAACCTCCATGGTATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAAACTTTCAGAAGTCCCATGAACATAGCTCGTCACAAATTAATTCACACTGGTTTCAAAAGATTCGCTTGCGACTTATGTGACTATAGATCAAACCAAAAGTCAAACCTCGAGAACCATCGTCGAAGACACACCAAAGACTATTCCTTTAAATGCGAACAATGTGAAAAAGGCTTCTTCCTGAGAACAGAATACTTAGAACATATAAATGTTCATACTAGGAAGCAATTGTACAAATGTGATCACTGTAGCAAGTCATACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTGTCTCGCAGTTAGAATTAAGAAATGACGTGACAAAGAAGCACGTGTGCACAATTTGTCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGTTTGTACGAGAAAATGAAGCATTTATGCGATCTATGCGGGGCAGTGTTGTCTTCCAAGAGGAGGTTGATGGTGCATAGGCGGGGCCACGTTAACGAGAAGATCGTAAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCGTACGGTTGCTCGCAGTGTGGAAGAAGGTTTACACAGAGGACTTCTTTGATATTACATCTTAGCCACTGGGACAACGATCACGACGTGCTTAGCAGCTGCGAAGATTTCCGAATCAAGAACGAGGATATTCTTCTCGATCCTGGACAAAAGTTCGAGGGGAACGAGAAAGTCTGCGACCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATCGTTCACGGTATCCATAGACCCTTCAAATGTGTCACGTGTGGGAAGACATATCCGCAGCAGTTTATGCTGAACGCCCATGTGAAAAAATCTCACACTCCTAAAACGATTTCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCGACTGATGTGGAAAGACATACGAAACGACATCATCGAGAAATGAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCTTTGATGACACACACAACTATGCATAACTTTATGCAGTTTCAACAATGTAACGCTTGTGGTACTACGTTCAACGATGCGTACAGCCTAAAGGAACACAACCGTTTGTACCACTACGATCCAACAACGTTGATTCAAGAGAAGCTCGAAGCTGACAGTCCGCAAAACACCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCATGGTAATATGCCAAATTATGAAAGACGTCGATATTTATGCGCTCTTTGCGGGAAAGAATTAAAAACCGCAAAAGGCCTCGAAATTCACAATCGATCGCACACCGGCGAAAAGCCTTATACCTGCGAGGTGTGTGGCAAGTGTTTCGCCTGTGAAACATTGCTCAGGACTCATAATGTCACACACACTGGCGAGAGAAAGTATTCTTGCGATCAGTGTGGCAAAGCTTTCACGCAGAGATCTACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTATGTTTGTCCTCGATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCACATGAAATCCTGTCGTTGA
Protein Sequence: MSLHTIEYRSRRAISRAIHECIKCGACFCHMRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGFKRFACDLCDYRSNQKSNLENHRRRHTKDYSFKCEQCEKGFFLRTEYLEHINVHTRKQLYKCDHCSKSYPYKKNLTNHLRTHHASVSQLELRNDVTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSSKRRLMVHRRGHVNEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRRFTQRTSLILHLSHWDNDHDVLSSCEDFRIKNEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTISCTECSFMGVNATDVERHTKRHHREMKFTCEICSENFVDKDSLMTHTTMHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLEADSPQNTTEHKCDVCGKVYKYKSVLKQHKVKAHGNMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00216535;
80% Identity: -