Bson009189.1
Basic Information
- Insect
- Bombus sonorus
- Gene Symbol
- -
- Assembly
- GCA_029958995.1
- Location
- JARWAU010000008.1:15625725-15630245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1 2.3e+02 3.1 7.4 1 23 73 96 73 96 0.92 2 19 3.9e-06 0.00044 21.1 0.3 1 23 102 124 102 124 0.97 3 19 2.4e-05 0.0027 18.7 1.4 1 23 130 152 130 152 0.97 4 19 0.002 0.22 12.6 0.6 1 23 158 180 158 180 0.98 5 19 3e-06 0.00033 21.5 7.0 1 23 186 208 186 209 0.96 6 19 0.0022 0.25 12.5 2.1 1 23 225 248 225 248 0.96 7 19 0.0053 0.58 11.3 1.0 3 23 258 278 256 278 0.96 8 19 8.1e-07 8.9e-05 23.3 0.4 2 23 285 306 284 306 0.98 9 19 0.00054 0.06 14.4 0.8 3 20 314 331 312 333 0.94 10 19 0.12 14 7.0 0.7 2 23 368 390 367 390 0.96 11 19 1.3e-05 0.0015 19.4 0.9 1 23 396 419 396 419 0.97 12 19 0.077 8.4 7.6 0.5 2 23 425 446 424 447 0.94 13 19 3.2e-05 0.0035 18.3 0.5 1 23 452 474 452 474 0.98 14 19 0.00024 0.027 15.5 0.5 2 23 481 503 480 503 0.94 15 19 7.6e-05 0.0084 17.1 2.1 1 23 525 548 525 548 0.93 16 19 0.0025 0.27 12.3 0.1 1 23 559 581 559 581 0.95 17 19 0.0095 1.1 10.5 3.6 1 23 587 609 587 609 0.94 18 19 5.9e-07 6.5e-05 23.7 1.1 1 23 615 637 615 637 0.98 19 19 2e-05 0.0023 18.9 0.1 1 21 643 663 643 664 0.96
Sequence Information
- Coding Sequence
- ATGCAGCAACATCCGCAATCTAATAGCAGTGGTAGGTATATAGTAAAACTTAACGAAGAACAACAAAGATCATCGCAGAAGAACATTCATTCTAAACAAATAAGTACCATAATAGTTCCACGTAGTTGCACATTTATTCCCTCATTATCTAAATTACTTCGTGCGCTTCATCGTTGTTTCTGTTTCAGATCGCGAAGAGCAATTTCTCGAGCAATTCACGAATGCATCAAATGTGGAGCCTGCTTCTGTCACACGAGGAAGCTGGTAGAACATCTGAAGAACCTCCATGGTATCGACAGAGCCTTCAGCTGCGACGAGTGTGGCAAAACTTTCAGAAGTCCTATGAACATAGCTCGTCACAAATTAATTCACACTGGTTTCAAAAGATTCGCTTGCGACTTATGCGATTATAGATCAAACCAAAAGTCAAACCTCGAGAGCCATCGTCGAAGACACACCAAAGACTATTCCTTTAAATGCGAACAATGTGAAAAAGGCTTCTTCCTGAGAACAGAATACTTAGAACATATAAATGTTCATACTAGGAAGCAATTGTACAAATGTGATCATTGTAGCAAGTCATACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTATCTCGCAGTTAGAATTAAGAAATGACGTGACAAAGAAGCACGTGTGCACGATTTGCCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGTTTGTACGAGAAAATGAAGCATTTATGCGATCTGTGCGGAGCAGTTTTGTCTTCCAAGAGGAGGTTGATGGTGCATAGGCGGAGCCACGCTAACGAGAAGATCGTAAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCGTACGGTTGCTCGCAGTGTGGAAGAAAGTTTACACAGAGGACTTCTTTGATATTGCATCTTAGCCACTGGGGCAACGATCACGACGTGCTTACCAGCTGCGAAGATTTCAGAATCAAGAACGAGGATATTCTTCTCGATCCTGgacaaaaGTTCGAGGGGAACGAGAAAGTCTGCGACCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATCGTCCACGGTATCCATAGACCCTTCAAATGTGTCACGTGTGGGAAGACATATCCGCAGCAGTTTATGTTAAACGCCCATGTGAAAAAATCTCACACTCCTAAAACGATCCCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCCACTGACGTGGAAAGACATACGAAACGACACCATCGAGAAACGAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTTGACAAGGATTCCTTGATGACTCACACAACTATGCATAACTTTATGCAGTTTCAACAATGTAACGCTTGTGGTACTACGTTCAACGACGCGTACAGCCTAAAGGAGCACAACCGTTTGTACCACTACGATCCAACAACGTTGATCCAAGAGAAGCTCGAAACTGACAGTCCGCAGAACATCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGGTGATATGCCAAATTACGAGAGACGTCGATATTTGTGCGCTCTTTGCGGGAAAGAATTAAAAACCGCAAAAGGCCTGGAAATTCACAATCGATCGCATACCGGCGAAAAGCCTTACACCTGCGAGGTATGTGGCAAGTGTTTCGCCTGTGAAACACTGCTCAGGACTCATAATGTCACGCACACTGGCGAGAGAAAGTATTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTACGTTTGTCCTCGATGTGGAAAAGGATTCGTCACCAGGACTGTCCTGAACACTCACATGAAGTCCTGTCGTTGA
- Protein Sequence
- MQQHPQSNSSGRYIVKLNEEQQRSSQKNIHSKQISTIIVPRSCTFIPSLSKLLRALHRCFCFRSRRAISRAIHECIKCGACFCHTRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGFKRFACDLCDYRSNQKSNLESHRRRHTKDYSFKCEQCEKGFFLRTEYLEHINVHTRKQLYKCDHCSKSYPYKKNLTNHLRTHHASISQLELRNDVTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSSKRRLMVHRRSHANEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRKFTQRTSLILHLSHWGNDHDVLTSCEDFRIKNEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTIPCTECSFMGVNATDVERHTKRHHRETKFTCEICSENFVDKDSLMTHTTMHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLETDSPQNITEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361060;
- 90% Identity
- iTF_00216535;
- 80% Identity
- -