Bpol003005.1
Basic Information
- Insect
- Bombus polaris
- Gene Symbol
- -
- Assembly
- GCA_014737335.1
- Location
- JACXIO010000273.1:950655-954688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.4 2.4e+02 2.8 7.1 1 23 84 107 84 107 0.92 2 19 3.5e-06 0.00036 21.1 0.3 1 23 113 135 113 135 0.97 3 19 2.1e-05 0.0022 18.6 1.4 1 23 141 163 141 163 0.97 4 19 0.0042 0.42 11.4 0.4 1 23 169 191 169 191 0.98 5 19 3.5e-06 0.00036 21.1 6.9 1 23 197 219 197 220 0.96 6 19 0.002 0.2 12.4 2.1 1 23 236 259 236 259 0.96 7 19 0.011 1.1 10.1 0.6 3 23 269 289 267 289 0.95 8 19 7.2e-07 7.3e-05 23.3 0.4 2 23 296 317 295 317 0.98 9 19 0.00041 0.042 14.6 0.7 3 20 325 342 323 344 0.94 10 19 0.11 11 6.9 0.7 2 23 379 401 378 401 0.96 11 19 1.2e-05 0.0012 19.4 0.9 1 23 407 430 407 430 0.97 12 19 0.081 8.2 7.4 0.9 2 23 436 457 435 458 0.94 13 19 4.8e-05 0.0049 17.5 0.3 1 23 463 485 463 485 0.98 14 19 0.00022 0.022 15.5 0.5 2 23 492 514 491 514 0.94 15 19 6.8e-05 0.0069 17.1 2.1 1 23 536 559 536 559 0.93 16 19 0.0022 0.22 12.3 0.1 1 23 570 592 570 592 0.95 17 19 0.0085 0.86 10.4 3.6 1 23 598 620 598 620 0.94 18 19 5.2e-07 5.3e-05 23.7 1.1 1 23 626 648 626 648 0.98 19 19 1.8e-05 0.0019 18.8 0.1 1 21 654 674 654 675 0.96
Sequence Information
- Coding Sequence
- ATGCAGACTTCAGTCTGTTTGTACTCTACGTTGTGTACGAGCAACATTGTATTCTTAAGTGTTATTAAGTATATAGTAAAACTTAACGAAGAACAACAAAAATCATCGCAGAAGAACATTCATTCTAAACAAATAAGTACCATAATAATTCCACGTAGTTGCACATTTATTCCTTCATTATCTAAATTACTTCGTGCACTTCATCGTTGTTTCTGTTTCAGATCGCGAAGAGCAATTTCTCGAGCAATTCACGAATGCATCAAATGTGGAGCCTGCTTCTGTCACATGAGGAAACTGGTAGAACACCTGAAGAACCTCCATGGTATCGATAGAGCCTTCAGCTGCGACGAGTGTGGCAAAACTTTCAGAAGTCCCATGAACATAGCTCGTCACAAATTAATTCACACTGGTTTCAAAAGATTCGCTTGCGACTTATGCGACTATAGATCAAACCAAAAGTCAAACCTCGAGAGCCATCGTCGAAGACACACCAAAGACTATTCCTTTAAATGCGAACAATGTGAAAAAGGCTTCTTCCTGAGAATAGAATACTTAGAACATATAAATGTTCATACTAGGAAGCAATTGTACAGATGTGATCACTGTAGCAAGTCATACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTATCTCGCAGTTAGAATTAAGAAATGACGTGACAAAGAAGCACGTGTGCACAATTTGCCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGTTTGTACGAGAAAATGAAGCATTTATGCGATCTATGCGGGGCAGTGTTGTCTTCCAAGAGGAGGTTGATGGTGCATAGGCGGGGCCACGTTAACGAGAAGATCGTAAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCGTACGGTTGCTCGCAGTGTGGAAGAAGGTTTACACAGAGAACTTCTTTGATATTACATCTTAGCCACTGGGACAACGGTCACGACGTGCTTAGCAGCTGCGAAGATTTCCGAATCAAGAACGAGGATATTCTTCTCGATCCTGGACAAAAGTTCGAGGGGAACGAGAAAGTCTGCGACCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATCGTTCACGGTATCCATAGACCCTTCAAATGTGTCACGTGTGGGAAGACATATCCGCAGCAGTTTATGCTAAACGCCCATGTGAAAAAATCTCACACTCCTAAAACGATTTCCTGCACTGAATGCAGTTTTATGGGGGTGAATGCGACTGATGTGGAAAGACATACGAAACGACACCATCGAGAAATGAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCCTTGGTGACACACACAACTATGCATAACTTTATGCAGTTTCAACAATGTAACGCTTGTGGTACTACGTTCAACGATGCGTACAGCCTAAAGGAGCACAACCGTTTGTACCACTACGATCCAACAACGTTGATTCAAGAGAAGCTCGAAGCTGACAGTCCGCAGAACACCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGGTGATATGCCAAATTACGAAAGACGTCGATATTTATGCGCTCTTTGCGGGAAAGAATTAAAAACCGCAAAAGGCCTCGAAATTCACAATCGATCGCACACCGGCGAAAAGCCTTATACCTGCGAGGTGTGTGGCAAGTGTTTCGCCTGTGAAACATTGCTCAGGACTCATAATGTCACACACACTGGCGAGAGAAAGTATTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTATGTTTGTCCTCGATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCACATGAAGTCCTGTCGTTGA
- Protein Sequence
- MQTSVCLYSTLCTSNIVFLSVIKYIVKLNEEQQKSSQKNIHSKQISTIIIPRSCTFIPSLSKLLRALHRCFCFRSRRAISRAIHECIKCGACFCHMRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGFKRFACDLCDYRSNQKSNLESHRRRHTKDYSFKCEQCEKGFFLRIEYLEHINVHTRKQLYRCDHCSKSYPYKKNLTNHLRTHHASISQLELRNDVTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSSKRRLMVHRRGHVNEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRRFTQRTSLILHLSHWDNGHDVLSSCEDFRIKNEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTISCTECSFMGVNATDVERHTKRHHREMKFTCEICSENFVDKDSLVTHTTMHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLEADSPQNTTEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361060;
- 90% Identity
- iTF_00216535;
- 80% Identity
- -