Basic Information

Insect: Bombus opulentus
Gene Symbol: -
Assembly: GCA_034509555.1
Location: CM067411.1:3126370-3129472[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.4e-06 0.00027 21.4 0.3 1 23 18 40 18 40 0.97

2 18 2.1e-05 0.0016 18.9 1.4 1 23 46 68 46 68 0.97

3 18 0.0017 0.13 12.9 0.6 1 23 74 96 74 96 0.98

4 18 2.6e-06 0.0002 21.7 7.0 1 23 102 124 102 125 0.96

5 18 0.0019 0.15 12.7 2.1 1 23 141 164 141 164 0.96

6 18 0.0046 0.36 11.5 1.0 3 23 174 194 172 194 0.96

7 18 7e-07 5.5e-05 23.5 0.4 2 23 201 222 200 222 0.98

8 18 0.045 3.5 8.4 0.4 3 15 230 242 228 244 0.93

9 18 0.11 8.5 7.2 0.7 2 23 277 299 276 299 0.96

10 18 1.2e-05 0.00091 19.7 0.9 1 23 305 328 305 328 0.97

11 18 0.066 5.2 7.9 0.5 2 23 334 355 333 356 0.94

12 18 2.8e-05 0.0022 18.5 0.5 1 23 361 383 361 383 0.98

13 18 0.00021 0.017 15.7 0.5 2 23 390 412 389 412 0.94

14 18 6.6e-05 0.0052 17.3 2.1 1 23 434 457 434 457 0.93

15 18 0.0021 0.17 12.6 0.1 1 23 468 490 468 490 0.95

16 18 0.0083 0.65 10.7 3.6 1 23 496 518 496 518 0.94

17 18 5.1e-07 4e-05 24.0 1.1 1 23 524 546 524 546 0.98

18 18 1.8e-05 0.0014 19.1 0.1 1 21 552 572 552 573 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.4e-06	0.00027	21.4	0.3	1	23	18	40	18	40	0.97
2	18	2.1e-05	0.0016	18.9	1.4	1	23	46	68	46	68	0.97
3	18	0.0017	0.13	12.9	0.6	1	23	74	96	74	96	0.98
4	18	2.6e-06	0.0002	21.7	7.0	1	23	102	124	102	125	0.96
5	18	0.0019	0.15	12.7	2.1	1	23	141	164	141	164	0.96
6	18	0.0046	0.36	11.5	1.0	3	23	174	194	172	194	0.96
7	18	7e-07	5.5e-05	23.5	0.4	2	23	201	222	200	222	0.98
8	18	0.045	3.5	8.4	0.4	3	15	230	242	228	244	0.93
9	18	0.11	8.5	7.2	0.7	2	23	277	299	276	299	0.96
10	18	1.2e-05	0.00091	19.7	0.9	1	23	305	328	305	328	0.97
11	18	0.066	5.2	7.9	0.5	2	23	334	355	333	356	0.94
12	18	2.8e-05	0.0022	18.5	0.5	1	23	361	383	361	383	0.98
13	18	0.00021	0.017	15.7	0.5	2	23	390	412	389	412	0.94
14	18	6.6e-05	0.0052	17.3	2.1	1	23	434	457	434	457	0.93
15	18	0.0021	0.17	12.6	0.1	1	23	468	490	468	490	0.95
16	18	0.0083	0.65	10.7	3.6	1	23	496	518	496	518	0.94
17	18	5.1e-07	4e-05	24.0	1.1	1	23	524	546	524	546	0.98
18	18	1.8e-05	0.0014	19.1	0.1	1	21	552	572	552	573	0.96

Sequence Information

Coding Sequence: ATGAGGAAGCTGGTAGAACACCTGAAGAACCTCCATGGTATCGACAGAGCCTTCAGCTGCGACGAATGTGGCAAAACTTTCAGAAGTCCCATGAACATAGCTcgtcataaattaattcacaCTGGTTTCAAAAGATTCGCTTGCGACTTATGCGATTATAGATCAAACCAAAAGTCAAACCTCGAGAGCCATCGTCGAAGACACACCAAAGACTATTCATTTAAATGCGAACAATGTGAAAAAGGCTTCTTCCTGAGAACAGAATACTTAGAACATATAAATGTTCATACTAGGAAGCAATTGTACAAATGTGATCACTGTAGCAAGTCATACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTGTCTCGCAGTTAGAATTAAGAAATGACGTGACAAAGAAGCACGTGTGCACAATTTGCCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGTTTGTACGAGAAAATGAAGCATTTATGCGATCTGTGCGGAGCAGTTTTGTCTTCCAAGAGGAGATTGATGGTGCATAGGCGGAGTCACGTTAACGAGAAGATCGTAAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCGTATGGTTGCTCGCAGTGTGGAAGAAGGTTCCCTCATTCCAGCCACTGGGGCAACGATCACGACGTGCTTAGCAGCTGCGAAGATTTCAGAATCAAGAACGAGGATATTCTTCTCGATCCTGGACAAAAGTTCGAGGGGAACGAGAAAGTCTGCGACCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATCGTCCACGGTATCCATAGACCCTTCAAATGTGTCACGTGTGGGAAGACATATCCGCAGCAGTTTATGCTAAACGCTCATGTGAAAAAATCTCACACTCCTAAAACGATCCCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCCACTGACGTGGAAAGGCATACGAAACGACACCATCGAGAAATGAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCCTTGATGACTCACACAACTATGCATAACTTTATGCAGTTTCAACAATGTAACGCTTGTGGTACTACTTTCAACGACGCGTACAGCCTAAAGGAGCACAACCGTTTGTACCACTACGATCCAACAACGTTGATTCAAGAGAAGCTCGAAACTGACAGTCCGCAGAACATCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGGTGATATGCCAAATTACGAGAGACGTCGATATTTGTGCGCTCTTTGCgggaaagaattaaaaaccGCAAAAGGCCTCGAAATTCACAATCGATCGCACACCGGCGAAAAACCTTACACCTGCGAGGTGTGTGGCAAGTGTTTCGCCTGTGAAACACTGCTCAGGACTCATAATGTCACGCACACTGGCGAGAGAAAGTATTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTATGTTTGTCCTCGATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCACATGAAGTCCTGTCGTTGA
Protein Sequence: MRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGFKRFACDLCDYRSNQKSNLESHRRRHTKDYSFKCEQCEKGFFLRTEYLEHINVHTRKQLYKCDHCSKSYPYKKNLTNHLRTHHASVSQLELRNDVTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSSKRRLMVHRRSHVNEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRRFPHSSHWGNDHDVLSSCEDFRIKNEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTIPCTECSFMGVNATDVERHTKRHHREMKFTCEICSENFVDKDSLMTHTTMHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLETDSPQNITEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00216535;
80% Identity: -