Bpyr019330.1
Basic Information
- Insect
- Bombus pyrosoma
- Gene Symbol
- -
- Assembly
- GCA_014825855.1
- Location
- CM026128.1:2593057-2596458[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.3 2.2e+02 2.8 7.1 1 23 81 104 81 104 0.92 2 19 3.4e-06 0.00032 21.1 0.3 1 23 110 132 110 132 0.97 3 19 6.1e-06 0.00058 20.3 1.1 1 23 138 160 138 160 0.97 4 19 0.0017 0.16 12.6 0.6 1 23 166 188 166 188 0.98 5 19 2.6e-06 0.00025 21.5 7.0 1 23 194 216 194 217 0.96 6 19 0.0019 0.18 12.4 2.1 1 23 233 256 233 256 0.96 7 19 0.01 0.99 10.1 0.6 3 23 266 286 264 286 0.95 8 19 6.9e-07 6.6e-05 23.3 0.4 2 23 293 314 292 314 0.98 9 19 0.00039 0.038 14.6 0.7 3 20 322 339 320 341 0.94 10 19 0.11 10 6.9 0.7 2 23 376 398 375 398 0.96 11 19 0.00029 0.028 15.0 0.9 1 23 404 427 404 427 0.96 12 19 0.065 6.2 7.6 0.5 2 23 433 454 432 455 0.94 13 19 2.7e-05 0.0026 18.2 0.5 1 23 460 482 460 482 0.98 14 19 0.00021 0.02 15.5 0.5 2 23 489 511 488 511 0.94 15 19 0.0015 0.15 12.7 2.3 1 23 533 556 533 556 0.93 16 19 0.0021 0.2 12.3 0.1 1 23 567 589 567 589 0.95 17 19 0.0061 0.59 10.8 4.7 1 23 595 617 595 617 0.94 18 19 5e-07 4.8e-05 23.7 1.1 1 23 623 645 623 645 0.98 19 19 1.7e-05 0.0017 18.9 0.1 1 21 651 671 651 672 0.96
Sequence Information
- Coding Sequence
- ATGTATAACGTGTACGAGATTCTCATAACATTTCATTGCACACCATCGAATATCGGTAGGTATATAGTAAAAATTAACGAAGGACAACAAAATCCATCGCAGAAGAACATTCATTCTAAACAAATAAGTATCATAATAATTCCACGTAGTTGCACATTTATTCCTTCATTATCTAAATTACTTCGTGCACTTCATCGTTGTTTCTGTTTCAGATCGCGAAGAGCAATTTCTCGAGCAATTCACGAATGCATCAAATGTGGAGCCTGCTTCTGTCACATGAGGAAACTGGTAGAACACCTGAAGAATCTCCATGGTATCGACAGAGCCTTCAGTTGCGACGAGTGTGGCAAAACTTTCAGAAGTCCGATGAACATAGCTCGTCACAAATTAATTCACACTGGTTTCAAAAGATTCGCTTGCGACATATGCGACTATAGATCAAACCAAAAGTCAAACCTCGAGAGTCATCGTCGAAGACACACCAAAGACTATTCCTTTAAATGTGAACAATGTGAAAAAGGCTTCTTCCTGAGAACAGAATACTTAGAACATATAAATGTTCATACTAGGAAGCAATTGTACAAATGTGATCACTGTAGCAAGTCATACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTGTCTCGCAGTTAGAATTAAGAAATGACGTGACAAAGAAGCACGTGTGCACAATTTGCCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGTTTGTACGAGAAAATGAAGCATTTATGCGATCTGTGCGGGGCAGTGTTGTCTTCCAAGAGGAGGTTGATGGTGCATAGGCGGGGCCACGTTAACGAGAAGATCGTAAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCGTACGGTTGCTCGCAGTGCGGAAGAAGGTTTACACAGAGAACTTCTTTGATATTACATCTTAGCCACTGGGGCAACGATCACGACGTGCTTAGCAGCTGCGAAGATTTCAGAATCAAGAACGAGGATATTCTTCTCGACGCTGGGCAAAAGTTCGAGGGGAACGAGAAAGTGTGCGATCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATCGTCCACGGTATCCATAGACCCTTCAAATGTATCACGTGTGGGAAGACATATCCGCAGCAGTTTATGCTAAACGCCCATGTGAAAAAATCTCACACTCCTAAAACGATCCCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCCACTGACGTGGAAAGACATACGAAACGACACCATCGAGAAATGAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCCTTGATGACTCACACAACTATGCATAACTTTATGGAGTTTCAACAATGTAACGCTTGTGGTACTACGTTCAACGACGCGTACAGCCTAAAGGAGCACAACCGTTTGTACCACTACGATCCAACAACGTTGATTCAAGAGAAGCTCGAAGGTGATAGTCCGCAGAATACCACGGAGCACAAATGCGACGTCTGTGAGAAGATTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGATGATATGCCAAATTACGAAAGACGTCGATATTTATGCGCTCTTTGCGGGAAAGAATTAAAAACTGCAAAAGGTCTCGAAATTCACAATCGATCGCACACCGGCGAAAAGCCTTACACCTGCGAGGTGTGTGGCAAGTGTTTCACCTGTGAAACATTGCTCAGGACTCATAATGTCACGCACACTGGCGAGAGAAAATATTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTATGTTTGTCCTCGATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCACATGAAGTCCTGTCGTTGA
- Protein Sequence
- MYNVYEILITFHCTPSNIGRYIVKINEGQQNPSQKNIHSKQISIIIIPRSCTFIPSLSKLLRALHRCFCFRSRRAISRAIHECIKCGACFCHMRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGFKRFACDICDYRSNQKSNLESHRRRHTKDYSFKCEQCEKGFFLRTEYLEHINVHTRKQLYKCDHCSKSYPYKKNLTNHLRTHHASVSQLELRNDVTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSSKRRLMVHRRGHVNEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRRFTQRTSLILHLSHWGNDHDVLSSCEDFRIKNEDILLDAGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCITCGKTYPQQFMLNAHVKKSHTPKTIPCTECSFMGVNATDVERHTKRHHREMKFTCEICSENFVDKDSLMTHTTMHNFMEFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLEGDSPQNTTEHKCDVCEKIYKYKSVLKQHKVKAHDDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFTCETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361060;
- 90% Identity
- iTF_00216535;
- 80% Identity
- -