Aanc015553.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apamea anceps
Gene Symbol
-
Assembly
GCA_951799955.1
Location
OX637513.1:18455798-18463913[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.061 5.2 8.6 8.6 1 23 268 290 268 290 0.96
2 9 7.9e-06 0.00067 20.8 1.9 2 23 298 319 297 319 0.95
3 9 0.067 5.7 8.4 0.3 1 23 323 345 323 345 0.97
4 9 0.00043 0.036 15.4 3.0 1 23 350 373 350 373 0.97
5 9 0.0013 0.11 13.8 0.2 3 23 379 400 378 400 0.96
6 9 0.0032 0.27 12.6 0.2 2 20 416 434 416 440 0.93
7 9 0.00045 0.038 15.3 0.1 3 23 450 471 450 471 0.95
8 9 0.00065 0.055 14.8 0.8 2 23 494 516 494 516 0.96
9 9 0.26 22 6.6 0.2 2 14 528 540 527 544 0.80

Sequence Information

Coding Sequence
ATGGGAGATGTACAAGTGTGCCGCATTTGCTTAAATACGAATGTTAAAATGCAGGACCTGTCGGCGTACCCTTTAGAATCTTATTTTGCATCATTTATGATTGAAAGTAAGCCTCTATACAACAACTTGCCCCCGTATGCCTGCTATGAGTGTGCAGCACTTGTGaggaagttttatttatttagagagAAGTGTCTGCAGAGCCAGGGGCTGCTGTGTGCAATAATTGATGACTGTGGAAAGCTAACACATACAGCTATAAAATCAATCGCCAGAAAAGAATTCCTCACAGTTGCAAATGTCACTAATATCAGTATAGAACAAGATATCACATCAAATTCTATCAGCATAGAAAGACCTGAGTTTGTTGTAGAAGTTATCAAAAAAGAGGAtcatgatgatgttgatgttcCTGATCATGTCAGTCCTGATAATAGTtctagtgatgatgatgagtgtgagaagaaaaaaaagaagaaagttcACGAAGTAGAGAAGGTTGAGATTTCTGTGAAGGTGGACATTCAGGAGGAGTCTGATGACCCTGAGCTCTCTGAAACAGCGGTTGATACAGCAAAATTGCCTATCAAAAAATCCCGAACAGCCCAGCCCAAGAAGCGAGTCAGACCCAAGAGGACTCGTACTATGGTTGCTAAGAAGAGTCCCCCTAAAGTTAGGAAGGATGACACACAATGCGAAAATCAGACTGATGATTTGATCAATGTTATTACTCTGTCGATTGAGGATCAGATAGAAGAGATGAACAAGCGGAAACAGTCGTCCAACTACCTTGACTGCCCGTACAAATGTCACCAGTGCTACAGGGGGTTCAACAACACGCACGCGTGGAAACATCACCTCACCAAACACTCCCCGAACCTCGGCGACATCGAGTGCAAGATTTGCAAGTACAGGTTTAAAACGAAGCGCAATCTTCAGAGACATGCCCTGAACCACGGGAAGAGATATGTTTGTAATTTATGTCCATACAACTCCAgtaatatAACTACTGTGAAGCAGCATCAAGGGTCACATAAGGGAGTCACGCATAAATGCAAGTTCTGTGACGAAGTTTTCaaTGTAAGAACAACGTACGTCAGCCACATGCGAATTAAACATCCATCAGAAAATATCTGCGGGTTTTGTGGGTACTCATTCTATAGCAAGCAGGGGCTCGTGGTTCACAAGAATATGATGCACAAGGACATTGAAACAAAACGAGAAGAGAACACAGAAGAAGGTCCATACTGCGAAGATTGTGACGTCAAATTCATATCGACGGAGGCGTACAAAAGACACATGGTCATGTCAGTCAAGCACACCCGGAGCACAGACTCTATGAACGGGTGTCGTGTTTGCGGCGAAATGTTCACGGATCCTGAAGAGTTACGTCTGCACAACCGTGAGGAGCATCCTAAGAAACAACCGAAGCACTACAATTACCAACGCAAGAGTCAAGTTCGGACAAAATGGCCCGCCAAGTGTCAACATTGTCCAGAAGAATTCGCCACCCCGCGAGCATACTGGAACCATTACAGACTGAAGCATCCTGATAAGTACGAGCCAGTGCGGAAGAACTGCGTCTGTGATATATGTGGCAAGAGATACGCGGTAAGTGTACAGTGGACAATAAAGGGTTTGCAGGTATAG
Protein Sequence
MGDVQVCRICLNTNVKMQDLSAYPLESYFASFMIESKPLYNNLPPYACYECAALVRKFYLFREKCLQSQGLLCAIIDDCGKLTHTAIKSIARKEFLTVANVTNISIEQDITSNSISIERPEFVVEVIKKEDHDDVDVPDHVSPDNSSSDDDECEKKKKKKVHEVEKVEISVKVDIQEESDDPELSETAVDTAKLPIKKSRTAQPKKRVRPKRTRTMVAKKSPPKVRKDDTQCENQTDDLINVITLSIEDQIEEMNKRKQSSNYLDCPYKCHQCYRGFNNTHAWKHHLTKHSPNLGDIECKICKYRFKTKRNLQRHALNHGKRYVCNLCPYNSSNITTVKQHQGSHKGVTHKCKFCDEVFNVRTTYVSHMRIKHPSENICGFCGYSFYSKQGLVVHKNMMHKDIETKREENTEEGPYCEDCDVKFISTEAYKRHMVMSVKHTRSTDSMNGCRVCGEMFTDPEELRLHNREEHPKKQPKHYNYQRKSQVRTKWPAKCQHCPEEFATPRAYWNHYRLKHPDKYEPVRKNCVCDICGKRYAVSVQWTIKGLQV