Basic Information

Insect: Oligia latruncula
Gene Symbol: Bcl11a
Assembly: GCA_948474745.1
Location: OX419699.1:16600439-16612205[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.063 4.4 8.3 8.6 1 23 263 285 263 285 0.96

2 12 8.2e-06 0.00057 20.5 1.9 2 23 293 314 292 314 0.95

3 12 0.069 4.8 8.2 0.3 1 23 318 340 318 340 0.97

4 12 0.00044 0.031 15.1 3.0 1 23 345 368 345 368 0.97

5 12 0.0014 0.096 13.5 0.2 3 23 374 395 373 395 0.96

6 12 0.0033 0.23 12.3 0.2 2 20 411 429 411 435 0.93

7 12 0.00046 0.032 15.0 0.1 3 23 445 466 445 466 0.95

8 12 0.00067 0.047 14.5 0.8 2 23 489 511 489 511 0.96

9 12 0.077 5.3 8.0 2.7 2 23 523 544 522 544 0.95

10 12 0.00019 0.013 16.3 4.9 1 23 550 572 550 572 0.99

11 12 2.2e-06 0.00016 22.3 0.3 1 23 578 600 578 600 0.98

12 12 0.00072 0.05 14.4 0.9 1 23 606 629 606 629 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.063	4.4	8.3	8.6	1	23	263	285	263	285	0.96
2	12	8.2e-06	0.00057	20.5	1.9	2	23	293	314	292	314	0.95
3	12	0.069	4.8	8.2	0.3	1	23	318	340	318	340	0.97
4	12	0.00044	0.031	15.1	3.0	1	23	345	368	345	368	0.97
5	12	0.0014	0.096	13.5	0.2	3	23	374	395	373	395	0.96
6	12	0.0033	0.23	12.3	0.2	2	20	411	429	411	435	0.93
7	12	0.00046	0.032	15.0	0.1	3	23	445	466	445	466	0.95
8	12	0.00067	0.047	14.5	0.8	2	23	489	511	489	511	0.96
9	12	0.077	5.3	8.0	2.7	2	23	523	544	522	544	0.95
10	12	0.00019	0.013	16.3	4.9	1	23	550	572	550	572	0.99
11	12	2.2e-06	0.00016	22.3	0.3	1	23	578	600	578	600	0.98
12	12	0.00072	0.05	14.4	0.9	1	23	606	629	606	629	0.98

Sequence Information

Coding Sequence: ATGGGAGACGTACAAGTGTGCCGCATTTGTTTAAATGTGGATGTTAAAATGCAGGACCTGTCGGCATACCCTTTAGAATCTTATTTTACATCATTAATTATTGAAAGTAAGCCTCTATACAACAACTTGCCCCCCTATGCCTGCTATGTGTGTGCAGCACTCGTGAGGAAGTTTTATTTATTTAGAGACAAGTGTCTGCAGAGCCAGGGGCTGCTATGTGCAATAATTGATGACTGTGGAAAGCTAACGCAAACAGCTATAAAATCAATTGCCAGAAAAAATCTCCTCACAGTTACAAACGTCACTAATATCAGCATAAAAGAAGATAACACAACAAATTCTATCAGCATAGAAAGACCCGAGTTTGTTGTAGAAGTTATCAAAAAAGAGGATCATGATGATGTTGATGTTCCTGATCATATCAGTCCTGATAACAGTTCTAGTGATGATGACTGTGAGAAGAAAATTCACGAAGTAGAGAAGGTTGAGATTTCTGTGAAGGTGGACATTCAGGAGGAGTCTGATGACCCTGAGCTTTCTGAAACAACAGTTGATACAGCAAAATTGCCTATAAAAAAATCCCGAACAGCCCAGCCCAAGAAGCGAGTAAGACCCAAGAGGACTCGTACTATGGTTGCTAAGAAGAGTCCACCCAAAGTGAAGAAGGATGACACACAATGCGAAGACCAGCCTGATGATTTGATCAACGTTATTACTCTCTCAATTGAGGATCAAATAGAAGAGATGAACAAACGGAAACAGTCGTCCAACTACCTTGACTGTCCGTACAAGTGCCACCAGTGTTACAGGGGGTTCAACAACACGCATGCGTGGAAACATCACCTTACCAAACACTCCCCGAACCTCGGCGACATAGAGTGCAAAATTTGCAAGTACAGGTTTAAAACGAAACGCAATCTTCAGAGACATGCCCTAAACCACGGGAAGAGATATGTTTGTAATTTATGTCCATACAACTCTAGTAATATAACTACTGTGAAGCAGCATCAAGGGTCTCATAAGGGAGTCACGCATAAATGCAAGTTCTGTGACGAAGTATTCAATGTAAGAACAACGTACGTCAGTCACATGCGGATCAAACATCCATCAGAAAACATTTGCGGGTTTTGTGGGTACTCATTCTACAGCAAGCAGGGGCTCGTGGTTCACAAGAATATGATGCACAAGGACATTGAAACAAAACAAGAAGAGAACACACAAGAAGGTCCATACTGCGAAGATTGTGACGTCAAATTCATATCGACGGAGGCGTACAAAAGACACATGGTCATGTCAGTCAAGCACACTCGAAGTACAGACTCTATGAACGGATGTCGTGTTTGCGGCGAGATGTTCACGGACCCTGAAGAGTTACGTCTTCATAATCGTGAGGAGCATCCTAAGAAACAACCGAAGCATTACAATTACCAACGGAAGAGTCAAGTTCGGACCAAATGGCCCGCCAAGTGTCAACATTGTCCAGAAGAATTCGCCACCCCGCGTGCATATTGGAACCACTACCGACTCAAACATCCTGATAAGTACGAGCCAGTGCGGAAGAATTGCGTCTGTGATATATGCGGCAAGCGATATGCTTGCAACGCCGTCCTCTCCATGCACAAACGCACCCACTTCGGGGAGCGTCCCTACAAATGCTCTCAATGCGACAAGGCCTGCTTCTCTGCGCACGACCTGCGCGTTCATCAGCAGAAACATTCCGACACAAGACCCTTCCCTTGCAGCGTGTGCTCCCAAGCTTTTAAGCGGAAAGAAGCGCTGGAAAGGCATTTGAAAATCCATTCCGGCGACAACCCATATAAGTGTGAGATTTGCGGAGTGGCTTTCGCCAAGTCTTGCACGAGAACGCTTCACGTGCGCACCGTACATACTAAGGAACCACCGCCGCCGCGCAAACGACGGAACAAGATCAATAAGTAA
Protein Sequence: MGDVQVCRICLNVDVKMQDLSAYPLESYFTSLIIESKPLYNNLPPYACYVCAALVRKFYLFRDKCLQSQGLLCAIIDDCGKLTQTAIKSIARKNLLTVTNVTNISIKEDNTTNSISIERPEFVVEVIKKEDHDDVDVPDHISPDNSSSDDDCEKKIHEVEKVEISVKVDIQEESDDPELSETTVDTAKLPIKKSRTAQPKKRVRPKRTRTMVAKKSPPKVKKDDTQCEDQPDDLINVITLSIEDQIEEMNKRKQSSNYLDCPYKCHQCYRGFNNTHAWKHHLTKHSPNLGDIECKICKYRFKTKRNLQRHALNHGKRYVCNLCPYNSSNITTVKQHQGSHKGVTHKCKFCDEVFNVRTTYVSHMRIKHPSENICGFCGYSFYSKQGLVVHKNMMHKDIETKQEENTQEGPYCEDCDVKFISTEAYKRHMVMSVKHTRSTDSMNGCRVCGEMFTDPEELRLHNREEHPKKQPKHYNYQRKSQVRTKWPAKCQHCPEEFATPRAYWNHYRLKHPDKYEPVRKNCVCDICGKRYACNAVLSMHKRTHFGERPYKCSQCDKACFSAHDLRVHQQKHSDTRPFPCSVCSQAFKRKEALERHLKIHSGDNPYKCEICGVAFAKSCTRTLHVRTVHTKEPPPPRKRRNKINK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00906431;
90% Identity: iTF_00121804;
80% Identity: -