Cpyr026522.1
Basic Information
- Insect
- Cosmia pyralina
- Gene Symbol
- Bcl11a
- Assembly
- GCA_946251865.1
- Location
- CAMIUE010000987.1:310508-321755[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.036 4.3 9.3 8.7 1 23 269 291 269 291 0.96 2 12 1e-05 0.0012 20.5 1.9 2 23 299 320 298 320 0.95 3 12 0.086 10 8.2 0.3 1 23 324 346 324 346 0.97 4 12 0.00055 0.064 15.1 3.0 1 23 351 374 351 374 0.97 5 12 0.0017 0.2 13.5 0.2 3 23 380 401 379 401 0.96 6 12 0.0041 0.49 12.3 0.2 2 20 417 435 417 441 0.93 7 12 0.00058 0.068 15.0 0.1 3 23 451 472 451 472 0.95 8 12 0.0007 0.083 14.7 1.3 2 23 495 517 495 517 0.96 9 12 0.096 11 8.0 2.7 2 23 529 550 528 550 0.95 10 12 0.00023 0.027 16.3 4.9 1 23 556 578 556 578 0.99 11 12 2.9e-06 0.00034 22.2 0.6 1 23 584 606 584 606 0.98 12 12 0.0009 0.11 14.4 0.9 1 23 612 635 612 635 0.98
Sequence Information
- Coding Sequence
- ATGGGAGACGTTCAAGTGTGCCGCATTTGTTTAAATACGGATGTAAAAATGCAGGACCTGTCATCATACCCTCTAGAATCTTATTTTGCTTCACTTATGATTGAAAGTAAGCCTCTATACACCAACTTGCCACCATATGCCTGCTATGAGTGTGCAGCACTTGTGaagaagttttatttatttagagagAAGTGTTTGCGGAGCCAGGGGCTGCTGTGTGGAATTATTGATGATTATGGAAAGATAACACGTCCAGCTATAAAGTCAATTGCCAGAAAAAATCTCCTCACAATTACAAATGTCACTAATAACAGCATAGTacaagataacacaatagattGTATTGGCATAGAAAGACCAGAATTCATTGTAGAAGTTATCAAACAAGAAGATCATGATGATATTGATGTTCCTGATCACATCAGTCCCGATAACAGTTCTagtgatgatgattatgaatgTGAAAAGAAAAGTAAGAAGAAAATTCACGAAGTAGAAAAGGTTGAGATTTCTGTGAAGATGGACATTCATGAGAAGTCTGATGATCCAGAACTTGCTGAAACAACAGTGGATGTACCAAAATTGCCAATAAAAAAATCCCGAACAGCCAAGCCAAAGAAGCGAGTAAGACCCAAAGGAACTCGTAGTACGGTTGCAAAGAGGAGTCCACCCAAAGTTAAGAAGGATGACACAAATTGCGAAGACCAGACTGATGATTTAATCAATGTTATTACTCTCTCGATTGAAGATCAGATAGAAGAGATGAACAAACGCAAACTGTCGTCCAATTACCTCGAATGTCCGTACAAATGCCACCAGTGCTACAAGGGATTCAATAACACGCACGCGTGGAAACATCACCTCACCAAACACTCTCCGAACCTCGGCGACATAGAGTGCAAAATCTGCAAGTACAGGTTTAAAACGAAACGCAATCTTCAGAGACATGCCCTAAACCACGGGAAGAGATATGTTTGCAATTTATGTCCATATAACTCTAGTAATATAACTACTGTGAAGCAACATCAAGGGTCACATAAGGGAGTCACGCATAAATGCAAGTTTTGTGATGAAGTTTTCAATGTAAGAACGACGTACGTTAGTCACATGCGGATCAAACATCCATCACAAAATATCTGCGGGTTTTGTGGGTACTCATTCTACAGCAAGCAAGGGCTCGTGGTACATAAGAATATGATGCACAAGGACATTCAAGCAAAACAAGAAGAGGACACAGAAGAAGGCCCATACTGCGAAGACTGTGACGTTAAATTTATATCGACTGAGGCGTACAAAAGACACATGGTGATGTCAGTCAAGCACACCCGGAGTACAGACTCTATGAACGGGTGTCGTGTTTGCGGCGAAATGTTCACGGACCCTGAAGAGTTACGTCTGCACAATCGTGAGGAGCATCCTAAGAAACAACCGAAGCACTACAATTACCAACGGAAGAGTCAAGTTCGGACCAAATGGCCCGCCAAGTGTCAACATTGTCCAGAAGAATTCGCCACCCCGCGTTCATACTGGAACCATTACCGACTGAAGCATCCTGACAAGTACGAGCCAGTGCGGAAGAATTGCGTCTGTGATATATGCGGCAAGAGATACGCGTGCAACGCCGTCCTCTCTATGCACAAGCGCACCCACTTCGGGGAGCGTCCGTACAAGTGCTCTCAGTGCGACAAGGCGTGCTTCTCCGCGCACGACCTGCGCGTTCATCAGCAGAAACATTCCGACACAAGACCATTCTCCTGCAGCGTGTGCTCCCAAGCTTTCAAGCGGAAAGAAGCGCTGGAGAGGCATTTGAAAATCCATTCCGGCGACAACCCATATAAGTGTGAGATTTGCGGCGTAGCGTTCGCCAAGTCTTGCACAAGAACACTTCACGTGCGCACCGTACATACTAAGGAACCTCCGCCACCGCGCAAACGTCGAAACAAGGTGAACAAATAA
- Protein Sequence
- MGDVQVCRICLNTDVKMQDLSSYPLESYFASLMIESKPLYTNLPPYACYECAALVKKFYLFREKCLRSQGLLCGIIDDYGKITRPAIKSIARKNLLTITNVTNNSIVQDNTIDCIGIERPEFIVEVIKQEDHDDIDVPDHISPDNSSSDDDYECEKKSKKKIHEVEKVEISVKMDIHEKSDDPELAETTVDVPKLPIKKSRTAKPKKRVRPKGTRSTVAKRSPPKVKKDDTNCEDQTDDLINVITLSIEDQIEEMNKRKLSSNYLECPYKCHQCYKGFNNTHAWKHHLTKHSPNLGDIECKICKYRFKTKRNLQRHALNHGKRYVCNLCPYNSSNITTVKQHQGSHKGVTHKCKFCDEVFNVRTTYVSHMRIKHPSQNICGFCGYSFYSKQGLVVHKNMMHKDIQAKQEEDTEEGPYCEDCDVKFISTEAYKRHMVMSVKHTRSTDSMNGCRVCGEMFTDPEELRLHNREEHPKKQPKHYNYQRKSQVRTKWPAKCQHCPEEFATPRSYWNHYRLKHPDKYEPVRKNCVCDICGKRYACNAVLSMHKRTHFGERPYKCSQCDKACFSAHDLRVHQQKHSDTRPFSCSVCSQAFKRKEALERHLKIHSGDNPYKCEICGVAFAKSCTRTLHVRTVHTKEPPPPRKRRNKVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906431;
- 90% Identity
- iTF_00121804;
- 80% Identity
- -