Basic Information

Insect: Luperina nickerlii
Gene Symbol: Bcl11a
Assembly: GCA_963855955.1
Location: OY979677.1:19874744-19886962[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.075 8.3 8.3 8.6 1 23 270 292 270 292 0.96

2 12 9.7e-06 0.0011 20.5 1.9 2 23 300 321 299 321 0.95

3 12 0.082 9.1 8.2 0.3 1 23 325 347 325 347 0.97

4 12 0.0015 0.17 13.6 3.0 1 23 352 375 352 375 0.97

5 12 0.0016 0.18 13.5 0.2 3 23 381 402 380 402 0.96

6 12 0.0039 0.44 12.3 0.2 2 20 418 436 418 442 0.93

7 12 0.00055 0.061 15.0 0.1 3 23 452 473 452 473 0.95

8 12 0.00079 0.088 14.5 0.8 2 23 496 518 496 518 0.96

9 12 0.091 10 8.0 2.7 2 23 530 551 529 551 0.95

10 12 0.00022 0.024 16.3 4.9 1 23 557 579 557 579 0.99

11 12 2.6e-06 0.00029 22.3 0.3 1 23 585 607 585 607 0.98

12 12 0.00086 0.095 14.4 0.9 1 23 613 636 613 636 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.075	8.3	8.3	8.6	1	23	270	292	270	292	0.96
2	12	9.7e-06	0.0011	20.5	1.9	2	23	300	321	299	321	0.95
3	12	0.082	9.1	8.2	0.3	1	23	325	347	325	347	0.97
4	12	0.0015	0.17	13.6	3.0	1	23	352	375	352	375	0.97
5	12	0.0016	0.18	13.5	0.2	3	23	381	402	380	402	0.96
6	12	0.0039	0.44	12.3	0.2	2	20	418	436	418	442	0.93
7	12	0.00055	0.061	15.0	0.1	3	23	452	473	452	473	0.95
8	12	0.00079	0.088	14.5	0.8	2	23	496	518	496	518	0.96
9	12	0.091	10	8.0	2.7	2	23	530	551	529	551	0.95
10	12	0.00022	0.024	16.3	4.9	1	23	557	579	557	579	0.99
11	12	2.6e-06	0.00029	22.3	0.3	1	23	585	607	585	607	0.98
12	12	0.00086	0.095	14.4	0.9	1	23	613	636	613	636	0.98

Sequence Information

Coding Sequence: ATGGGAGACGTACAAGTGTGCCGCATTTGTTTAAATACGGATGTTAAAATGCAGGACCTGTCGGCATACCCTTTGGAATCTTATTTTACATCATTAATTATTGAAAGTAAGCCTCTATACAAGAACTTGCCCCCATATGCCTGCTATGTGTGCGCAGCACTTGTGaggaagttttatttatttagagacAAGTGTCTGCAGAGTCAGGGGCTGCTATGTGCAATAATTGATGACTGTGGAAAGCTAACACATACAGCTATAAAATCAATTGCCAGAAAAAATCTCCTCACAGTTACAAATGTCACTAATATCAGCATAGAACAAGATAACACAACAAATTCTATCAGCATAAAAAGACCCGAGTTTGTTGTAGAAGTTATCAAAAAAGAGGATcatgatgatgttgatgttcCTGATCACATCAGTCCTGATAACAGTTCTAGTGATGATGACTGTGAGAAGAAAAGTAAGAAGAAAATTCACGAAGTAGAGAAGGTTGAGATTTCTGTGAAGGTGGACATTCAGGAGGAGTCTGATGACCCTGAgCTTTCTGAAACAACAGTCGATACAGCGAAATTGCCTATAAAAAAATCCCGAACAGCTCAGCCCAAGAAGCGAGTAAGACCCAAGAGGACTCGTACTATGGTTGCAAAGAAGAGTTCACCCAAAGTTAAGAAGGATGACAGTGATGACACACAATGTGAAGACCAGCCTGATGATTTGATCAACGTTATTACTCTCTCGATTGAGGATCAAATAGAAGAGATGAACAAACGGAAACAGTCGTCCAACTACCTTGACTGTCCGTACAAGTGCCACCAGTGTTACAGGGGGTTCAACAACACGCATGCGTGGAAACATCACCTTACCAAACACTCCCCGAACCTCGGCGACATAGAGTGCAAAATTTGCAAGTACAGGTTTAAAACGAAACGCAATCTTCAGAGACATGCCCTAAACCACGGGAAGAGAtatgtttgtaatttatgtCCATACAACTCTAGTAATATAACTACTGTGAAGCAGCATCAAGGGTCACATAAGGGAGTCACCCATAAATGCAAGTTTTGTGATGAAATTTTCAATGTAAGAACAACGTACGTCAGTCACATGCGAATCAAACATCCATCAGAAAACATCTGCGGGTTTTGTGGGTACTCATTCTACAGCAAGCAGGGGCTCGTGGTTCACAAGAATATGATGCACAAGGACATTGAAACAAAACAAGAAGAGAACACACAAGAAGGTCCATACTGCGAAGATTGTGACGTCAAATTCATATCGACGGAGGCGTACAAAAGACACATGGTCATGTCAGTCAAGCACACTCGAAGTACAGACTCAATGAACGGATGTCGTGTTTGCGGCGAGATGTTCACGGACCCTGAAGAGTTACGTCTTCACAATCGTGAGGAGCATCCTAAGAAACAACCGAAGCATTACAATTACCAACGGAAGAGTCAAATTCGGACGAAATGGCCCGCCAAGTGTCAACATTGTCCAGAAGAATTCGCCACCCCGCGTGCGTACTGGAACCACTACCGACTCAAGCATCCTGATAAGTACGAGCCAGTGCGGAAGAATTGCGTCTGTGATATATGCGGCAAGCGGTACGCGTGCAACGCCGTCCTCTCCATGCACAAACGCACCCACTTCGGGGAGCGTCCCTACAAATGCTCTCAATGCGATAAGGCCTGCTTCTCTGCGCACGACCTGCGCGTTCATCAGCAGAAACATTCCGACACAAGACCCTTCCCTTGCAGCGTGTGCTCCCAAGCTTTCAAGCGGAAAGAAGCGCTGGAAAGGCATTTGAAAATCCATTCCGGCGACAACCCATATAAGTGTGAGATTTGCGGTGTGGCTTTTGCCAAGTCTTGCACGAGAACGCTTCACGTGCGAACCGTACATACTAAGGAACCACCACCGCCACGCAAACGACGGAACAAGATCAATAAGTAA
Protein Sequence: MGDVQVCRICLNTDVKMQDLSAYPLESYFTSLIIESKPLYKNLPPYACYVCAALVRKFYLFRDKCLQSQGLLCAIIDDCGKLTHTAIKSIARKNLLTVTNVTNISIEQDNTTNSISIKRPEFVVEVIKKEDHDDVDVPDHISPDNSSSDDDCEKKSKKKIHEVEKVEISVKVDIQEESDDPELSETTVDTAKLPIKKSRTAQPKKRVRPKRTRTMVAKKSSPKVKKDDSDDTQCEDQPDDLINVITLSIEDQIEEMNKRKQSSNYLDCPYKCHQCYRGFNNTHAWKHHLTKHSPNLGDIECKICKYRFKTKRNLQRHALNHGKRYVCNLCPYNSSNITTVKQHQGSHKGVTHKCKFCDEIFNVRTTYVSHMRIKHPSENICGFCGYSFYSKQGLVVHKNMMHKDIETKQEENTQEGPYCEDCDVKFISTEAYKRHMVMSVKHTRSTDSMNGCRVCGEMFTDPEELRLHNREEHPKKQPKHYNYQRKSQIRTKWPAKCQHCPEEFATPRAYWNHYRLKHPDKYEPVRKNCVCDICGKRYACNAVLSMHKRTHFGERPYKCSQCDKACFSAHDLRVHQQKHSDTRPFPCSVCSQAFKRKEALERHLKIHSGDNPYKCEICGVAFAKSCTRTLHVRTVHTKEPPPPRKRRNKINK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00906431;
90% Identity: iTF_00121804;
80% Identity: -