Ajug009949.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421376.1:748405-755951[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.4e-11 3.8e-08 33.3 0.0 4 39 177 213 174 217 0.89 2 4 1.1e-11 7.9e-09 35.5 0.2 1 39 228 266 228 270 0.94 3 4 1.4e-13 9.8e-11 41.6 0.1 4 45 286 328 283 328 0.96 4 4 8.8e-18 6.2e-15 55.0 0.1 2 42 336 377 335 379 0.94
Sequence Information
- Coding Sequence
- ATGCCAGGCGACGCTGGCGGGTCCCGCGTCAAGAGCGAGCCACTGTCAGAAGAAGACGACAGCAACTCCTTCGTCCACAGTTATCTGTCTAATCAGCTCTCCTCTGAGGAATTAAATGTGAAATTGGATACAGAATACGTGCGGAGGGAAAACGTATCGACGCATCTATTGCATCACTTACATGGGTCTGGTCTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCCGCCGCTACTCCCGTGTGCGTCAAGCAGGAGCCCAGGGAGCCCGCGCCAGCACTCACGCTGGAGACGCTTGAACCGGCGCCTCATAGCGCAGAGGGTGCTGCCCTTATTGACAGGCATTTAGCACTACTGAATGCTAATGAGATGCCTGATGCCACGGAGTTCATGCCGCTGGTGGCTGTTAAAGATGAACCACTCTCTGAAGGAGAACAACATCAATTAAGCGGAGAAGATACAAGCGACTCATGCGGCACTCAACCGGAGTCAGTAACGCGTTGCAGCCCCAAGAGTTGGACGCAGAAGGACATGGACAATGCGTTAGAAGCGCTCCGTAAACACAACATGAGTCTTACTAAGGCCTCAGCAACATACGGCATACCATCGACAACTTTATGGCAGCGTGCTCACAGACTAGGCATTGACACGCCGAAGAAAGAAGGCGCTTCAAAGTCATGGAGCGAGGAAGACCTGCGCGGCGCACTGCAGGCGCTCAGGGCCGGTGCTATATCTGCCAATAAAGCGAGCAAGGCTTACGGTATACCGAGCAGCACTCTGTACAAGATAGCCCGTCGCGAGGGCATCCGTCTGTCGGCGCCGTTCAACGCGGCCCCGACCGCGTGGCGCCGCTCGGACCTGCAGCGCGCGCTCGCCTGCATCCGCGCCGGCGCCGCCACCGTGCAGCGCGCCGCCACCGCATACGGGATACCCACCGGCACCCTGTACGGTCGATGCAAGCGCGAGGGTATTGAGTTATCTCGCTCCAACCCCACGCCGTGGTCTGAAAATGCGATGGTTGAGGCGCTGGAGGCAGTCAGaGTAGGTCAGATGTCTATCAACCAGGCGGCGATACATTATAACCTGCCTTACTCATCTCTTTACGGCCGGTTCAAGAGATGCAAGTATCAAAATCAGGTAACCCAACCACCTCAACAACAAGACATGCAGAAACCACAAGAAGTTGATCAAAACCACCAATTTTACTATCAACAGCTACCACCAACCATCCACCATCCTTCAGACGACGCCATTCCTGCATTCAGCCAATATGCACACACATCACACGATTACTCTGAGTTTTACAACTTCAGTAGTGTGGTTACTAGCTGA
- Protein Sequence
- MPGDAGGSRVKSEPLSEEDDSNSFVHSYLSNQLSSEELNVKLDTEYVRRENVSTHLLHHLHGSGLEELAPLAPAGPAATPVCVKQEPREPAPALTLETLEPAPHSAEGAALIDRHLALLNANEMPDATEFMPLVAVKDEPLSEGEQHQLSGEDTSDSCGTQPESVTRCSPKSWTQKDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEEDLRGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRSDLQRALACIRAGAATVQRAATAYGIPTGTLYGRCKREGIELSRSNPTPWSENAMVEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQNQVTQPPQQQDMQKPQEVDQNHQFYYQQLPPTIHHPSDDAIPAFSQYAHTSHDYSEFYNFSSVVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341251; iTF_01010284; iTF_01358802; iTF_00858465; iTF_00819977; iTF_00787538; iTF_00428019; iTF_00428917; iTF_01429855; iTF_00819072; iTF_00859382;
- 90% Identity
- iTF_00858465;
- 80% Identity
- -