Lpop002091.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992147.1:991129-1006893[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-11 5.7e-08 33.3 0.0 4 39 176 212 173 216 0.89 2 4 9.4e-12 1.2e-08 35.5 0.2 1 39 227 265 227 268 0.94 3 4 5.8e-14 7.4e-11 42.6 0.1 2 45 283 327 282 327 0.96 4 4 7.2e-18 9.3e-15 55.0 0.1 2 42 335 376 334 378 0.94
Sequence Information
- Coding Sequence
- ATGCCAGGCGACGCTGGAGGGTCCCGCGTAAAGAGCGAGCCCCTGTCCGAAGAGGAAGACAGCAACTCGTTCATCCACAGCTATCTGCCTACTCAGTTGTCTTCAGGGGAGTTGAGTGTGAAACTGACAACAGAATATCAGCTCAGGAATGACAATGTCCACACGCATCTATTGCATCACTTACATGGGTCCGGTCTGGAGGAAATGGCACCGCTGGCGCCGGCGGGACCTGCCGCGACGCCAGTATGCGTCAAGCAGGAGCCCGGTGAACCTGTGCCCGCGCTGACGCTGGAGACACTTGAACCGGTACCGCATAGTGCAGAGggAGCTGCCCTTATAGACAGACATTTAGCTTTACTGAACGACATGCCTGATTCCACGGAGTTCATGCCGCTAGTGGCTGTTAAAGATGAACCACTCTCCGAAGGAGAACAGCAACATTTAAGTGGCGAAGACACCAGTGACTCGTGTGGTACTCAACCCGAATCAGTGACACGCTGCAGCCCAAagagttggacgcaaaaggaCATGGACAACGCGTTAGAAGCGCTGCGTAAACACAACATGAGCCTTACTAAGGCATCAGCAACATATGGTATACCTTCAACAACTCTGTGGCAGCGTGCGCATAGACTCGGCATAGACACGCCGAAAAAGGAAGGCGCTTCGAAGTCCTGGAGCGAGGAAGACCTGCGTGGAGCTCTGCAGGCGCTCAGGGCCGGCGCTATCTCCGCTAACAAAGCGAGCAAGGCTTATGGTATCCCGAGCAGCACCCTGTACAAGATAGCCCGTCGCGAGGGCATCCGCCTGGCCGCGCCGTTCAACGCCGCGCCGACCGCGTGGCGCCGCGCCGACCTGCAGCGCGCACTCGCCTGCATCCGCGCCGGCGCCGCCACCGTGCAGCGCGCCGCCACTGCATACGGGATACCCACCGGCACACTGTACGGTCGATGTAAGCGTGAGGGCATCGAGTTGTCACGATCTAACCCTACGCCCTGGTCTGAGAACGCAATGGTAGAAGCTTTGGAAGCAGTCAGGGTGGGCCAAATGTCAATAAACCAGGCCGCGATACATTACAACCTGCCATACTCGTCACTGTACGGCAGATTCAAGAGATGCAAGTATCAAAATCAGGTAATGCAACCTCCTCAACAAGACCTCCAAAAGCCATTAGAAATTGACCAGAACCAACAATTCTACTACCAACAGCTACCACCTACTGTTCACCACCCATCGGACGACACTATACCTGCATTCAGCCAATATCCTCACACGTCACACGACTATTCTGAATTTTATAACTTTAGTGGTGTGGTTACCAGCTGA
- Protein Sequence
- MPGDAGGSRVKSEPLSEEEDSNSFIHSYLPTQLSSGELSVKLTTEYQLRNDNVHTHLLHHLHGSGLEEMAPLAPAGPAATPVCVKQEPGEPVPALTLETLEPVPHSAEGAALIDRHLALLNDMPDSTEFMPLVAVKDEPLSEGEQQHLSGEDTSDSCGTQPESVTRCSPKSWTQKDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEEDLRGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALACIRAGAATVQRAATAYGIPTGTLYGRCKREGIELSRSNPTPWSENAMVEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQNQVMQPPQQDLQKPLEIDQNQQFYYQQLPPTVHHPSDDTIPAFSQYPHTSHDYSEFYNFSGVVTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063500;
- 90% Identity
- iTF_01010284; iTF_00063500;
- 80% Identity
- -