Tjap008514.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065937.1:13551693-13559559[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-11 3.5e-08 33.3 0.0 4 39 175 211 172 215 0.89 2 4 5.3e-11 3.8e-08 33.2 0.3 2 39 227 264 226 267 0.92 3 4 3.9e-14 2.8e-11 43.2 0.1 2 45 282 326 281 326 0.96 4 4 4.6e-18 3.2e-15 55.8 0.1 1 42 333 375 333 377 0.95
Sequence Information
- Coding Sequence
- ATGCCGGGCGACGGCTTGTCCCGCGTCAAGAGCGAGCCACTGTCCGAGGAAGAAGACAGCAACTCATTTGTCCACAACTATCTCTCTAATCAGGTTTCTTCAGAAGAGTCGCATGTAGTGAAATTTGAACCTGAATACCTAAGGAGGGACCACGCATCCACGCATCTCCTGCACCATCTACATGGCTCGGGCCTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGCCCCGCAGCGACGCCGGTGTGCGTCAAGCAGGAGCCTACAGAACCCGCGCCCGCACTTACTCTTGAGACATTGGAATCCGCGCCGCAGTCCGCTGAGGGCGCTGCCCTCATAGATCGACACTTAGCTTTACTGAACGCGAGTGATGTGCCCGACGAGTTCATGCCCCTAGCGTCTGTCAAAGATGAACCACTTTCTGAAGGAGAACAACAACAATTAAGCGGCGAGGATACTAGCGACTCGTGTGGTACTCAGCCGGAGTCTTCAACACGATGTAGCCCCAAGAGTTGGACCCAGAAGGACATGGACAACGCGCTGgaagcgctcaggaaacacaaCATGAGTCTGACCAAGGCATCAGCCACGTACGGCATTCCATCAACAACACTATGGCAGCGCGCGCACAGACTGGGCATCGACACGCCGAAGAAGGAAGGGGCTTCTAAATCTTGGAGTGAGGCAGATCTTCGTGGCGCCCTGCAGGCACTCAGAGCCGGGGCTATCTCTGCCAATAAAGCTAGCAAGGCTTATGGCATCCCCAGCAGCACGCTGTACAAGATCGCCCGGCGCGAGGGCATCCGGCTGGCGGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTCGCGCGCGCGCTCGCCTGCATCCGCGCCGGCGCCGCCACCGTGCAGCGCGCCGCCACCGCCTACGGCATACCCACTGGCACACTGTATGGTCGTTGCAAGCGCGAGGGCATCGAGTTGTCTCGCTCTAATCCCACGCCTTGGTCCGAGACCGCTATGGTGGAAGCGCTGGAAGCTGTCAGAGTAGGCCAGATGTCTATCAACCAGGCGGCGATACACTTTAACCTGCCCTACTCCTCGCTCTACGGCAGGTTTAAGAGGTACAAATATCAGAATCAGGTCTCTCAACCCCATCAACAAGACGTACAAAAACCTCAAGAAGTTGACCAAAGCCAGCAATTGTACTACCAGCAGCTACCACCTGCCGTCCACCATCCTTCTGACGACACCATCCCAGGGTACCAATACGGGCATACATCGCACGACTACTCCGAAGCTATGTACTACAACAACTTCACTAGTGTAGTTACTAGCTGA
- Protein Sequence
- MPGDGLSRVKSEPLSEEEDSNSFVHNYLSNQVSSEESHVVKFEPEYLRRDHASTHLLHHLHGSGLEELAPLAPAGPAATPVCVKQEPTEPAPALTLETLESAPQSAEGAALIDRHLALLNASDVPDEFMPLASVKDEPLSEGEQQQLSGEDTSDSCGTQPESSTRCSPKSWTQKDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALACIRAGAATVQRAATAYGIPTGTLYGRCKREGIELSRSNPTPWSETAMVEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRYKYQNQVSQPHQQDVQKPQEVDQSQQLYYQQLPPAVHHPSDDTIPGYQYGHTSHDYSEAMYYNNFTSVVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063500;
- 90% Identity
- iTF_00819977;
- 80% Identity
- -