Lcon012401.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438924.1:18883080-18893019[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-11 6.7e-08 33.0 0.0 4 38 176 211 173 216 0.89 2 4 5.5e-11 8.4e-08 32.7 0.2 3 39 229 265 227 268 0.91 3 4 1.1e-13 1.7e-10 41.3 0.1 2 45 283 327 282 327 0.96 4 4 7.1e-17 1.1e-13 51.5 0.1 2 42 335 376 334 378 0.94
Sequence Information
- Coding Sequence
- ATGCCAGGCGACGCCGGCGTGTTTTGCGTCAAAAGCGAGCCACTGTCCGAGGAAGACGACAGCAACTCCTTCGTCCACAGCTATCTGGCTAATCAGCTTTCTTCGGAGCATTTACCTCTGAAGTTGGGAACTGACCTGAGGTGTGACAATGTACCGACGCATCTATTGCACCATTTACACGGTTCCgggctggaggagctggcaccGCTGGCGCCGGCGGGCCCGGCCGCGACCCCCGTGTGCGTGAAACAGGAGCCCAGCGAGCCCGCGCCCGCTCTCACGCTAGAGACCCTCGAACCCGCACCACATAGCGCTGAGGGGGCAGCCTTGATAGACAGGCATTTGGCGTTACTAAACGCTAGCGATGACCCCGACGCCACAGAGTTCATGCCGCTGATGGCGGTTAAAGACGAACCACTTTCTGAAGGAGAGCAGCCGCATCTGAGTGGCGAGGACACGAGTGACTCGAGCGGCACGCAGCCGGAGTCGGCGCCGCGCTGCAGTCCCAAGACCTGGACACAGAAGGACATGGACAATGCGCTGGAGGCGCTTCGGAAACACAACATGAGCCTCACTAAGGCATCAGCAACATACGGCATCCCATCGACAACACTgtggcagcgagcccaccgcatgGGCATCGACACGCCGAAGAAGGAGGGCGCAGCCAAGTCGTGGAGCGACGCCGACCTGCGCGGCGCGCTGCAGGCGCTGCGGGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTATGGCATCCCGTCGAGCACGCTGTACAAGATAGCGCGTCGCGAGGGCATCAGGCTGGCGGCGCCGTTCAACGCCGCGCCGACCGCGTGGCGCCGCGCCGACCTGCGCCGCGCGCTCGCCTGCATCCGCGCCGGCGCCGCCACCGTGCAGCGCGCCGCCTCCGCATACGGCATCCCCACCGGCACGCTGTACGGTCGGTGCAAGCGGGAGGGCATCGAGTTGTCCCGCTCTAACCCTACGCCATGGTCCGAGAACGCGATGATGGAAGCATTAGAGGCAGTCAGACTGGGCCAGATGTCGATCAACCAAGCGGCGATACACTACAACCTGCCCTACTCCTCACTCTACGGCAGGTTCAAGAGATGCAAGTATCAAAATCAGGTAGGACAGCAACCTCAATCGCAAGACACGCAAAAGCCACAAGAAGTTGACCAAAATCAACCGTTTTACTACCAACAGCTGCCATCTACCGTCCATCACCCGTCTGACGACGGTCTCCCCGCATACACCCAGTACCCTCAGACGTCGAACGACTACTCGGAACATTACTACAACTTCAGTAGTGTGATCACAAGCTGA
- Protein Sequence
- MPGDAGVFCVKSEPLSEEDDSNSFVHSYLANQLSSEHLPLKLGTDLRCDNVPTHLLHHLHGSGLEELAPLAPAGPAATPVCVKQEPSEPAPALTLETLEPAPHSAEGAALIDRHLALLNASDDPDATEFMPLMAVKDEPLSEGEQPHLSGEDTSDSSGTQPESAPRCSPKTWTQKDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGAAKSWSDADLRGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLRRALACIRAGAATVQRAASAYGIPTGTLYGRCKREGIELSRSNPTPWSENAMMEALEAVRLGQMSINQAAIHYNLPYSSLYGRFKRCKYQNQVGQQPQSQDTQKPQEVDQNQPFYYQQLPSTVHHPSDDGLPAYTQYPQTSNDYSEHYYNFSSVITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063500;
- 90% Identity
- iTF_01358802;
- 80% Identity
- -