Spin000083.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387626.1:969654-980839[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.2e-11 4.4e-08 33.3 0.0 4 39 177 213 174 217 0.89 2 4 5e-11 7e-08 32.7 0.2 3 39 230 266 228 269 0.91 3 4 2.1e-12 2.9e-09 37.1 0.1 2 45 284 328 283 328 0.96 4 4 1.1e-17 1.5e-14 54.1 0.1 2 41 336 376 335 379 0.93
Sequence Information
- Coding Sequence
- ATGCCAGGCGACGCCGGCGTGTTCCGCGTCAAGAGCGAGCCACTGTCCGAGGAAGACGATAGCAACTCCTTCGTCCACAGCTATCTGGCTAATCAGCTTTCTTCGGAGGATTTACCTGTGAAGTTGGGAACTGAGTACCTGAGGAGTGACAATGTACCGACGCATCTATTGCACCATTTACACGGTTCCGGGCTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCGACCCCCGTGTGCGTGAAACAGGAGCCCAGCGAGCCCGCGCCCGCGCTCACGCTAGAGACCCTCGAACCCGCACCACATTCCGCTGAGGGGGCAGCCTTGATAGACAGGCATTTGGCGTTACTGAACGCTAGCGATGACCCCGACGCCACAGAGTTCATGCCGCTGATGGCAGTTAAAGATGAACCACTTTCTGAAGGAGAGCAGCCGCATCTGAGCGGCGAGGACACGAGTGACTCGAGCGGCACGCAGCCGGAGTCGGCGCCGCGCTGCAGCCCCAAGACCTGGACACAGAAGGACATGGACAACGCGCTGGAGGCGCTGCGGAAACACAACATGAGCCTCACTAAGGCATCAGCAACATACGGCATTCCATCGACGACACTGTGGCAGCGAGCCCACCGGCTGGGCATCGACACGCCGAAGAAGGAGGGCGCGGCGAAGTCGTGGAGCGACGCCGACCTGCGCGGCGCGCTGCAGGCGCTGCGGGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTATGGCATCCCGTCGAGCACGCTGTACAAGATAGCGCGTCGCGAGGGCATCCGCCTGGCCGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTGCGCGAGGCGCTCGCCTGCATCCGCGCCGGCGCCGCCACCGTGCAGCGCGCCGCCTCCGCCTGGGGCATCCCCACCGGCACGCTGTACGGTCGGTGCAAGCGAGAGGGCATAGAGTTGTCCCGCTCTAACCCCACGCCGTGGTCCGAGAATGCGATGGTAGAAGCACTGGAGGCAGTCAGAGTGGGCCAGATGTCGATCAACCAAGCAGCGATACACTACAACCTGCCCTACTCCTCACTCTATGGCAGGTTCAAGAGATGCAAGTATCGAAATCAGGTAGCACAGCAACCTCAATCGCAAGACACGCAAAAGCAACAAGAAGTTGACCAAAACCAACAGTTTTACTACCAACAGCTGCCATCTACCGTCCATCACCCGTCTGACGACGGTCTCCCTACATACAGCCAGTACCCCCAAACGACGAACGACTACTCGGAACATTACTACAACTTCAGTAGTGTGGTCACAAGCTGA
- Protein Sequence
- MPGDAGVFRVKSEPLSEEDDSNSFVHSYLANQLSSEDLPVKLGTEYLRSDNVPTHLLHHLHGSGLEELAPLAPAGPAATPVCVKQEPSEPAPALTLETLEPAPHSAEGAALIDRHLALLNASDDPDATEFMPLMAVKDEPLSEGEQPHLSGEDTSDSSGTQPESAPRCSPKTWTQKDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSDADLRGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLREALACIRAGAATVQRAASAWGIPTGTLYGRCKREGIELSRSNPTPWSENAMVEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYRNQVAQQPQSQDTQKQQEVDQNQQFYYQQLPSTVHHPSDDGLPTYSQYPQTTNDYSEHYYNFSSVVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063500;
- 90% Identity
- iTF_00859382;
- 80% Identity
- -