Cbil009471.2
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- -
- Assembly
- GCA_036417725.1
- Location
- CM071147.1:17057144-17073433[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-11 3.9e-08 33.4 0.0 3 39 176 213 174 217 0.89 2 4 2.4e-12 4e-09 36.6 0.3 1 39 228 266 228 270 0.94 3 4 2.4e-14 3.9e-11 43.0 0.1 2 45 284 328 283 328 0.96 4 4 4.1e-18 6.8e-15 55.1 0.1 2 42 336 377 335 379 0.94
Sequence Information
- Coding Sequence
- ATGCCAGGCGACGCTGGCGTGTCCCGCGTCAAGAGCGAACCACTCTCCGAGGAAGAGGACAGCAACTCGTTCTTCCACAGTTACATCTCCACTCAGCTGTCTTCTGAggaattaaaatatgtaaaattggACACGCAGTATGAAAATGTACCGACGACGCGTGTTTCATTGCATCATTTACACGGTTCTGGTCTGGAGGATCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCGACGCCCGTGTGCGTCAAGCAGGAGCCGACCGAGCCCGCGCCCGCACTCACGCTCGAAACACTCGAGCCAGCGCCGCATACAGCTGAGGGTGCGGCTCTCATAGACAGACATTTAGCATTACTGAACGCAAATGAAATTGCTGAAGCTACAGACTTCATGCCGCTAGTGGCTGTTAAAGATGAACCACTTTCTGAAGGAGAACAGCAACACTTAAGCGGCGAGGATACAAGCGACTCGTGCAGCACTCAGCCGGAGTCGGTTACGCGCTGTAGCCCCAAGAGCTGGACGCAGAACGACATGGACAATGCGTTGGAGGCCCTAAGGACACATAACATGAGCCTTACTAAGGCATCAGCGACGTATGGCATACCATCAACAACTCTATGGCAGCGTGCTCACAGACTCGGCATCGATACGCCGAAGAAAGAAGGAGCATCCAAGTCGTGGAGCGAGGAGGACTTGCGAAGTGCACTGCAAGCGCTCAGGGCCGGAGCTATATCTGCAAACAAAGCGAGCAAGGCTTACGGCATCCCTAGCAGCACGCTGTACAAGATAGCTCGCCGCGAGGGCATCCGTCTGTCGGCGCCGTTCAACGCCGCGCCGACCGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGCCTGCATCCGCGCCGGCGCCGCCACCGTGCAGCGCGCCGCCTCCGCATACGGGATACCGACGGGCACTCTGTACGGTCGGTGCAAGCGGGAGGGTATCGAGTTGTCCCGCTCCAACCCTACGCCGTGGTCAGAGAATGCGATGGTCGAGGCACTAGAGGCAGTCAGAGTGGGGCAGATGTCCATCAACCAGGCTGCTATACATTACAACCTGCCATACTCCTCACTTTATGGCAGGTTTAAGAGATGCAAGTATCAAAATCAGGTAACACAACCTCTTCAACAGCAGGACACGCAAAACCCTCAGGAAGTTGACCAAAACCAACAATTTTACTACCAACAGCTACCACCCGTCCATCCGTCAGACGCCACCCCTACATACAACCAATACGCACACACTTCACACGATTACTCGGAGTTCTATAACTTCAGCAGTGTGGTGACCAGCTGA
- Protein Sequence
- MPGDAGVSRVKSEPLSEEEDSNSFFHSYISTQLSSEELKYVKLDTQYENVPTTRVSLHHLHGSGLEDLAPLAPAGPAATPVCVKQEPTEPAPALTLETLEPAPHTAEGAALIDRHLALLNANEIAEATDFMPLVAVKDEPLSEGEQQHLSGEDTSDSCSTQPESVTRCSPKSWTQNDMDNALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEEDLRSALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQRALACIRAGAATVQRAASAYGIPTGTLYGRCKREGIELSRSNPTPWSENAMVEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQNQVTQPLQQQDTQNPQEVDQNQQFYYQQLPPVHPSDATPTYNQYAHTSHDYSEFYNFSSVVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063500;
- 90% Identity
- -
- 80% Identity
- -