Aips025196.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052982.1:6231363-6235227[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.058 5.9 8.5 0.2 6 21 220 235 220 236 0.95 2 13 0.00091 0.092 14.2 0.2 2 23 262 283 261 283 0.96 3 13 0.092 9.3 7.9 1.6 1 23 293 315 293 315 0.98 4 13 1.8e-05 0.0018 19.6 3.0 2 23 327 348 326 348 0.97 5 13 8e-05 0.0081 17.5 2.0 1 23 356 379 356 379 0.96 6 13 0.016 1.6 10.3 0.0 2 23 386 407 385 407 0.95 7 13 0.0001 0.01 17.2 2.7 2 23 414 435 414 435 0.98 8 13 3.3e-07 3.4e-05 25.0 1.2 1 23 441 463 441 463 0.96 9 13 3.1e-05 0.0031 18.8 0.5 1 23 469 491 469 491 0.99 10 13 1.1e-06 0.00011 23.4 0.2 1 23 497 519 497 519 0.98 11 13 2.3e-05 0.0024 19.2 0.4 1 23 525 547 525 547 0.99 12 13 4.3e-05 0.0044 18.4 2.2 1 21 553 573 553 575 0.96 13 13 1.7e-06 0.00017 22.8 0.6 1 23 581 603 581 603 0.98
Sequence Information
- Coding Sequence
- atggaaCTAAGTGTTCAGACATTCGACAGAATATGCCGCGTCTGTTTAATAGAATGTGCCGACATGAAGTCACTTTTTACAACGTTGGACGGTGAAAAACGCAACTTGTTTGAAATCCTTGCATTTACGGCTGATATCAATGTTAAATTCGAGGATGGGCTGCCAAAACAGGTTTGTAGTGAATGTGAGTCTGTCATGTGTAAGGCTGATGCATTTAAGCGCCGCTGCTTGAATTCTGAGACAATATTAAACAACATCTACCAGAGCTCATTAAATCGCGGAGAAACAtcgaatattgacaaagaatGCACAATAAAAGATGAAAATCTAGATTTAACAGACAAAGTAAGCAACAATATTAGTTTTGAGACCTCAAATGATGCTAATTACAGTTTTAAAGAGAGTTTTGATAAGAAAAATGTGTTGATACAAGACCCTGCAGTATATCCAATTGCCGATTCTAGTTTTTGTAAGCTCACCGATTCTAGAGTACAAGAAAACTCAGAGCAATCAGTCAAAGAAGAGATTCACTTGAattttgatgatgatgtagaTTTTCCAGACCATTATGACGATGAAACACATTGTGAGACGATACCTATTGAATATGAAGAGGCTAAACCTCTTAAATCTGAAACTAAGAAATACACTTGTTGCTGCGGAGTATCATTTACTTCAAAAGACAAGTATAAAAGCCATTTGAAGCAAGAAAACTGTAATAAGTACaagaaaattctagaaaaagttaataaaaatctattattacCTGTAAAAAATGAAATGCAATGTGTTGAATGTAACCGCAATTTCAAAACTCCTAATGCTTGGAGAATACACCAAGAAGAGCATCGTAAAGAGGAAAGCAAATCCGTGTCATATGTTTGCAGATTTTGCTTAAGTCAGTTCAAAACGGAAGCCGCGTTAAGAACGCACAGTAAAAAACATGAGAAAACTGTTACCAGTAAAGCAGAGTCACAACAATGTTCATTCTGTTTGcgcaaattcaaaaataaaagttcgtTAACAGCTCACATGCAGCGTCATGAAAAAACGGACAACATTAAACACATTTGCAAAATCTGCAAAAGAGAATTTAAGTACAAAGCTTACTTAGAAAACCACGTACTGACTATGCACACTAGAAAGAATGGGATTACGTGCGAGGTTTGTGCGCTAAGTTTTCCTAACGAAGAGAGTTTGGAGTTACACAAAGATAGTCATAAAAATGAGAAGAAAAACCGTTGTTCGGTCTGCAATAAAGCATTCGTAATGTTGTGTACGCTGAAGGAACATATGCGGACACATACCGGTGAGAAACCATTCCTTTGCTCGCAATGCGGACGAGGATTTAGTCAGAAAACTAATTTGGCGCAGCACATGAGAAGGCATCAGGGATTGAAACCTTTTAAGTGTGAGAGTTGTGAAAAAGGATTTGTATCAAAAGGTGAACTGGACGCTCACAGGCGCAAACACAGCGGTGCACACCCCTTCGTTTGTGACGACTGTGGAAACGGCTTCACCACCTCAAGCGCGCTTGTGAAACACCGGAGAATACACACCGGTGAAAAACCCTACCAATGTGATCTCTGCCCAATGAGGTTCGCTGCATCTGGCACGTTGAAGAACCACAGAAGAACACACACCGGAGAACGTCCTTTCCAATGCTCTTACTGCGAAAAAGCCTTCGTTCAACGCAATGATTTGATCTCCCACATCCGCTGTCATACTGGTGAAAAACCATACATATGTAACCAATGCGGTCAGTCGTTTAGAAAAGCATCTGGTTTGAAAAGTCATGTTAAAATGCATGTGAAGGAGCCGGCGAATTTGTTGCAGGGGGTCGGTTTGATTTTAAATGGGATGCAGTGTGCGGAACAGTGA
- Protein Sequence
- MELSVQTFDRICRVCLIECADMKSLFTTLDGEKRNLFEILAFTADINVKFEDGLPKQVCSECESVMCKADAFKRRCLNSETILNNIYQSSLNRGETSNIDKECTIKDENLDLTDKVSNNISFETSNDANYSFKESFDKKNVLIQDPAVYPIADSSFCKLTDSRVQENSEQSVKEEIHLNFDDDVDFPDHYDDETHCETIPIEYEEAKPLKSETKKYTCCCGVSFTSKDKYKSHLKQENCNKYKKILEKVNKNLLLPVKNEMQCVECNRNFKTPNAWRIHQEEHRKEESKSVSYVCRFCLSQFKTEAALRTHSKKHEKTVTSKAESQQCSFCLRKFKNKSSLTAHMQRHEKTDNIKHICKICKREFKYKAYLENHVLTMHTRKNGITCEVCALSFPNEESLELHKDSHKNEKKNRCSVCNKAFVMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCESCEKGFVSKGELDAHRRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYICNQCGQSFRKASGLKSHVKMHVKEPANLLQGVGLILNGMQCAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00446427; iTF_00364257; iTF_00852040; iTF_00772231; iTF_00851018; iTF_00300470; iTF_00375563; iTF_01093345; iTF_01247364; iTF_01440325; iTF_00746022; iTF_00758470; iTF_00039079; iTF_00039081; iTF_00042857; iTF_00121675; iTF_01029485; iTF_00906383; iTF_01027567; iTF_01094255; iTF_00147824; iTF_00037076; iTF_01441300; iTF_00908149; iTF_01030453; iTF_01028535; iTF_00925048; iTF_00120762; iTF_00122650; iTF_01026587; iTF_01095163; iTF_00043773; iTF_00374461; iTF_00038046; iTF_00888510; iTF_01031327; iTF_00831456; iTF_00447468; iTF_00301422; iTF_00302375; iTF_00425678; iTF_00449486; iTF_01063054; iTF_01062084; iTF_00041093; iTF_00712177; iTF_00928916; iTF_01064886; iTF_00040093; iTF_01063968; iTF_00810319; iTF_00274613; iTF_01340463; iTF_01339255; iTF_01535151; iTF_00809392; iTF_00726705; iTF_01533269; iTF_01534165; iTF_01230870; iTF_01532342; iTF_00124494; iTF_00445431; iTF_01192953; iTF_00667770; iTF_00685690; iTF_00123580; iTF_01084476; iTF_01085632; iTF_00623389; iTF_00238015; iTF_00273823;
- 90% Identity
- iTF_00043773; iTF_00041093; iTF_00042857; iTF_00040093;
- 80% Identity
- -