Basic Information

Insect: Leucania comma
Gene Symbol: -
Assembly: GCA_958295575.1
Location: OY282489.1:10183492-10186571[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.066 7 8.5 0.1 6 21 220 235 220 236 0.95

2 13 0.00019 0.021 16.4 0.2 2 23 262 283 261 283 0.96

3 13 0.0085 0.9 11.3 5.0 1 23 296 318 296 318 0.97

4 13 0.00026 0.028 16.0 3.5 1 23 329 351 329 351 0.99

5 13 9.5e-05 0.01 17.4 2.0 1 23 359 382 359 382 0.96

6 13 0.012 1.3 10.8 0.1 2 23 389 410 388 410 0.95

7 13 0.005 0.53 12.0 5.1 1 23 416 438 416 438 0.98

8 13 3.7e-07 3.9e-05 25.0 1.2 1 23 444 466 444 466 0.96

9 13 2.9e-05 0.0031 19.0 0.8 1 23 472 494 472 494 0.98

10 13 1.2e-06 0.00013 23.4 0.2 1 23 500 522 500 522 0.98

11 13 0.00028 0.03 15.9 0.3 1 23 528 550 528 550 0.96

12 13 4.8e-05 0.0051 18.3 2.2 1 21 556 576 556 578 0.96

13 13 2.4e-06 0.00026 22.4 0.6 1 23 584 606 584 606 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.066	7	8.5	0.1	6	21	220	235	220	236	0.95
2	13	0.00019	0.021	16.4	0.2	2	23	262	283	261	283	0.96
3	13	0.0085	0.9	11.3	5.0	1	23	296	318	296	318	0.97
4	13	0.00026	0.028	16.0	3.5	1	23	329	351	329	351	0.99
5	13	9.5e-05	0.01	17.4	2.0	1	23	359	382	359	382	0.96
6	13	0.012	1.3	10.8	0.1	2	23	389	410	388	410	0.95
7	13	0.005	0.53	12.0	5.1	1	23	416	438	416	438	0.98
8	13	3.7e-07	3.9e-05	25.0	1.2	1	23	444	466	444	466	0.96
9	13	2.9e-05	0.0031	19.0	0.8	1	23	472	494	472	494	0.98
10	13	1.2e-06	0.00013	23.4	0.2	1	23	500	522	500	522	0.98
11	13	0.00028	0.03	15.9	0.3	1	23	528	550	528	550	0.96
12	13	4.8e-05	0.0051	18.3	2.2	1	21	556	576	556	578	0.96
13	13	2.4e-06	0.00026	22.4	0.6	1	23	584	606	584	606	0.98

Sequence Information

Coding Sequence: atggaaATACGTGTACAGACATTCGACAGAATATGCCGCGTCTGTTTAATAGAAGGTGTGGACATGAAGTCTCTATTTACGAAGATGGACGGTGAAAACCGCAACCTTTTAGAAATCCTTGCATTTACTGctgatattaatattaaattcgaGGATAGTCTGCCAAAACAGGTTTGTGTTGAATGTGAGTCGGTGATGTGCAAAGCTGATGCATTTAAACGCCGTTGCCTCAACTCTGAGACGATTTTAAATAACATCTATCAGAATTCTCTAAGCCGAGCTGAGACATCGAATACTGACAAAAAATGCTCAATAAAGGATGAAACTAGGGATATAACGGAGAAATTAAGCAACTATATTACTTTTGAGAATTCAAATATTACGAATTACAATTCCCAAGAAGGTTTTGATAAGAAAAATGTATTTATCGAAGGAACCTCAATATACCCAATCGCCGACACTAGTTTTTGCAAGCTCACCGACTCAAAAGTACCTGAAAACCCTGAACAATCCGTTAAAGAAGAGATAAACATCAATTTTGATGATGAAATTAGCTTTTCTGATCATTATGATGATGGAACTCAATGTGATGCTGTACCTGTCGAGTTTAAGGAggaaaaacctttaaaaaacgAAGGGAAAAAGCTCACGTGTTGCTGTGGACAAGCATTTACTACAAAAGACAAATACAAAAGCCATGTAAAACAAGAAAACTGCAATAAGTACAAAAAGCTACTAGAAaaagttaacaaaaacaaattagttACTGTAAAAAATGAGATAGAATGTGTTGAATGTAACCAAAAGTTTAAAACACCCAACGATTGGAGAGTTCATCAACAAATCCATCGTAATGAACATTTATCAGAAAACAAATCACTATTACACGTCTGTAAATTCTGTTTATGTCAGTTCAAAACGCAAGCTGCGTTAAAAACTCACATTCTAAAGCATGAGAAAACTATAAACAGCAAACCTGAATCATACCAATGCTCTTTCTGTTTACGTCAATTCAAGAATAAAACCTCTTTGTCCACCCACATACAGCGTCACGAGCAAACCGATAACATAAAACATGTCTGCAAAGTATGTAAAAGAGAATTCAAATACAAAGCGTACTTAGAAAATCACGTACTAACAATGCATTCAAGAAAAAATGGTATAAGTTGTGAGGTTTGTGCGCAAAGTTTTCCTAATGAAGAGAGTTTAGAATTACATAAAGATAGCCATAAGAACGAAAAGAAGCATCGTTGTACGATCTGTAATAAGGCATTTCTTATGCTTTGTACGTTGAAGGAGCATATGCGGACCCACACTGGTGAGAAGCCGTTCCTTTGCTCGCAATGTGGGCGAGGGTTTAGTCAGAAGACGAATTTGGCGCAGCATATGAGAAGACATCAGGGATTGAAACCGTTCAAGTGTGAAAATTGTGAAAAGAGATTCGTATCAAAAGGCGAACTAGACGCTCACAACCGCAAACACAGCGGTGCACATCCCTTCGTCTGCGACGATTGTGGCAACGGCTTCACAACATCGAGCGCGCTCGTCAAACACCGCCGTATACACACTGGCGAAAAACCTTACCTATGCGACTTATGCCCAATGCGGTTCGCTGCTTCTGGTACCTTGAAAAACCATCGTAGAACGCACACTGGTGAAAGACCATTTCAATGCTCGTATTGCGAAAAAGCATTCGTTCAACGCAACGATTTGATCTCTCATATACGCTGTCATACTGGAGAAAAGCCCTACATTTGTACGCAGTGCGGTCAGTCTTTTAGAAAAGCTTCAGGATTAAAGAGTCATGTCAAAATGCATGTTAAGGAACCGGGGAATTTGCTGCAAGGAGTTGGTGTGATGCTGAGTGGGATGCAGTGTGCTGAACAGTGA
Protein Sequence: MEIRVQTFDRICRVCLIEGVDMKSLFTKMDGENRNLLEILAFTADINIKFEDSLPKQVCVECESVMCKADAFKRRCLNSETILNNIYQNSLSRAETSNTDKKCSIKDETRDITEKLSNYITFENSNITNYNSQEGFDKKNVFIEGTSIYPIADTSFCKLTDSKVPENPEQSVKEEININFDDEISFSDHYDDGTQCDAVPVEFKEEKPLKNEGKKLTCCCGQAFTTKDKYKSHVKQENCNKYKKLLEKVNKNKLVTVKNEIECVECNQKFKTPNDWRVHQQIHRNEHLSENKSLLHVCKFCLCQFKTQAALKTHILKHEKTINSKPESYQCSFCLRQFKNKTSLSTHIQRHEQTDNIKHVCKVCKREFKYKAYLENHVLTMHSRKNGISCEVCAQSFPNEESLELHKDSHKNEKKHRCTICNKAFLMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCEKRFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYLCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYICTQCGQSFRKASGLKSHVKMHVKEPGNLLQGVGVMLSGMQCAEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00041986;
90% Identity: iTF_01028535;
80% Identity: -