Egla026622.1
Basic Information
- Insect
- Eugnorisma glareosa
- Gene Symbol
- -
- Assembly
- GCA_947578425.1
- Location
- OX387985.1:2545167-2547565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.34 29 6.0 1.6 6 21 217 232 214 233 0.92 2 13 0.014 1.3 10.3 0.2 3 23 260 280 258 280 0.93 3 13 0.096 8.3 7.7 5.1 1 23 293 315 293 315 0.97 4 13 2e-05 0.0017 19.3 3.0 1 23 326 348 326 348 0.99 5 13 0.00039 0.034 15.2 2.5 1 23 356 379 356 379 0.96 6 13 0.0008 0.069 14.2 0.1 2 23 386 407 385 407 0.95 7 13 0.0073 0.63 11.2 5.1 1 23 413 435 413 435 0.98 8 13 3e-07 2.6e-05 25.0 1.2 1 23 441 463 441 463 0.96 9 13 6.9e-06 0.0006 20.7 0.8 1 23 469 491 469 491 0.98 10 13 9.9e-07 8.6e-05 23.4 0.2 1 23 497 519 497 519 0.98 11 13 2.5e-05 0.0022 19.0 0.3 1 23 525 547 525 547 0.99 12 13 4e-05 0.0034 18.4 2.2 1 21 553 573 553 575 0.96 13 13 2e-06 0.00017 22.4 0.6 1 23 581 603 581 603 0.98
Sequence Information
- Coding Sequence
- ATGGAATTAAGTGTTCAGACATTCGACAGAATATGCCGCGTCTGTTTAATAGAATGTGCCGACATGAGGTCTCTATTTACAAAGATGGATGGCGAAAAACGCAACTTGTTCGAAATCCTTGCATTTACTGCTGATATTAATGTTAAATTCGAGGATGGTCTGCCAAAACAGGTTTGCGGTGAATGTGAGTCGGTCATGTGCAAGGCTGATGCATTTAAACGCCGCTGTCTGAATTCTGAGACAATTCTAAACAAAATCTACCAAAACTCCTTGAACCGTGGAGAAACATCGAGTATTGACAAAAAATGCTCGATAAAAGATGAAAATAGGGGTATAACCGAAAAATTAAGCAATTATATTAGCTTTGAGACTTCAACTGTTACTAATTACAGTTCCCAAGACAGTTTTGATAAGAAAAATATGTTAATACAAGATCCTTCATTATACCCAATCGCCGACGCTAGTTTTTGTAAGCTCACAGAATCTGCAGTATCTGAAGGCTCTGAAAAACCTGTCAAAGAAGAGATAAACTTCAATTTTGATGATGACGTAAGCTTCCCTGATCACTACGATGATGGAACACCGTGTGACACATTACCTAAAGAAGAAGAACCTTTAAAAACTGAATCAAAGAAATACACATGTTTCTGTAGACTATCATTTACTACTAAAGACAAGTATAAAAGCCATTTAAAGCAAGAAAACTGTAATAAGTACAAAAAAATAATAGAAAAAATTAATAAAAACAAATTAGTTACTGTAAACAATGAGATAGAATGCATTGAATGTAATCAAAAGTTCAAAACTCTAAATGCGTGGCGGATACACCAAGAAACCCATCGTAATGAGCCTTTATCTGAAAGCAAATCATTATTGCATGTTTGCAAATTCTGCTTATGTCAGTTCAAAACGGAGGCAGCATTAAGAACTCACACTCTAAAACACGAAAACACCTTAAACAGTAAAACAGAATCATATCAATGCTCGTTCTGTTTACGTAAATTTAAGAATAAAACTTCGCTAACTGCTCACATTCAGCGCCATGAAGAAACGGACAACATAAAACACATTTGCAAACTATGTAAAAGAGAATTTAAATACAAAGCTTATTTAGAAAACCATGTATCAACTATGCATTCAAGAAAGAATGGTATAAGCTGTGAGATATGTGCGCAAAGTTTTCCTAACAAAGACAGTTTAGAATTGCATAAAGACAGTCATATAAATGAGAAAAAGCACCGTTGTACGGTTTGCAATAAAGCTTTTCTTATGTTATGTACACTGAAGGAGCATATGCGGACACATACTGGTGAGAAACCATTCTTATGCTCGCAATGCGGACGAGGGTTTAGCCAGAAGACTAATTTGGCGCAGCACATGAGAAGACATCAGGGGTTGAAACCTTTTAAGTGTGAGAATTGTGATAAGAGATTCGTATCAAAAGGCGAACTCGACGCGCACAACCGAAAACACAGCGGAGCGCACCCTTTTGTCTGTGATGACTGCGGTAACGGCTTCACAACCTCAAGCGCCTTGGTGAAACACCGTCGAATACATACCGGAGAGAAACCTTACCAATGTGACCTCTGCCCAATGAGGTTTGCTGCATCAGGCACTTTGACGAATCATCGAAGAACCCACACCGGTGAACGACCCTTCCAATGCTCCTACTGTGAAAAAGCCTTCGTCCAACGTAATGATTTAATCTCCCATATCCGTTGCCATACCGGTGAAAAGCCATATATTTGTACACAATGCGGTCAGTCGTTCAGAAAAGCTTCCGGATTGAAAAGTCATGTTAAAATGCATGTGAAGGAGCCGGGGAGTATGCTGCAAGGTGTTAGTGTGATGTTGAATGGAATGCAGTGTGCTGAACAGTGA
- Protein Sequence
- MELSVQTFDRICRVCLIECADMRSLFTKMDGEKRNLFEILAFTADINVKFEDGLPKQVCGECESVMCKADAFKRRCLNSETILNKIYQNSLNRGETSSIDKKCSIKDENRGITEKLSNYISFETSTVTNYSSQDSFDKKNMLIQDPSLYPIADASFCKLTESAVSEGSEKPVKEEINFNFDDDVSFPDHYDDGTPCDTLPKEEEPLKTESKKYTCFCRLSFTTKDKYKSHLKQENCNKYKKIIEKINKNKLVTVNNEIECIECNQKFKTLNAWRIHQETHRNEPLSESKSLLHVCKFCLCQFKTEAALRTHTLKHENTLNSKTESYQCSFCLRKFKNKTSLTAHIQRHEETDNIKHICKLCKREFKYKAYLENHVSTMHSRKNGISCEICAQSFPNKDSLELHKDSHINEKKHRCTVCNKAFLMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCDKRFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYQCDLCPMRFAASGTLTNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYICTQCGQSFRKASGLKSHVKMHVKEPGSMLQGVSVMLNGMQCAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041986;
- 90% Identity
- iTF_01532342;
- 80% Identity
- -