Alit043952.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424521.1:4024747-4031384[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0054 0.67 11.9 0.6 5 21 219 235 216 236 0.93 2 13 0.0001 0.013 17.4 0.1 2 23 262 283 261 283 0.96 3 13 0.022 2.7 10.0 4.3 1 23 296 318 296 318 0.97 4 13 7.6e-05 0.0094 17.8 2.5 1 23 329 351 329 351 0.99 5 13 3.2e-05 0.0039 19.0 2.9 1 23 359 382 359 382 0.97 6 13 0.0032 0.39 12.7 0.2 2 23 389 410 388 410 0.95 7 13 0.0037 0.46 12.4 5.0 1 23 416 438 416 438 0.98 8 13 3.8e-07 4.7e-05 25.0 1.2 1 23 444 466 444 466 0.96 9 13 3e-05 0.0037 19.0 0.8 1 23 472 494 472 494 0.98 10 13 1.2e-06 0.00015 23.4 0.2 1 23 500 522 500 522 0.98 11 13 0.00035 0.044 15.7 0.3 1 23 528 550 528 550 0.96 12 13 4.9e-05 0.0061 18.3 2.2 1 21 556 576 556 578 0.96 13 13 2.5e-06 0.00031 22.4 0.6 1 23 584 606 584 606 0.98
Sequence Information
- Coding Sequence
- atggaaATAAGTGTTCAGACGTTCGACAGAATATGCCGCGTATGTTTAGTAGAATGCACCGATATGAAGTCTCTATTTGCGAAGATGGATGGCGAAAAACGCAACTTGTTCGAAATCCTTGCATTTACTGCTgatattaaagttaaattcgAGGATACTCTGCCAAAACAGGTTTGTGGTGAATGCGAGTCGGTCATGTGCAAGGCTGATGCATTTAAACGCCGATGCCAGAATTCTGAGACGATTTTAAACTACGTCTACCAGAATTCCGTAAACCGAGGTGAAACATcgaaaaatgacaaaaaatgcTCAATAAAAGATGAAAATGGCGATTTAACGGAGAAGTTAACTAACCATATAACTTTTGAGACTTCAAATGTTACTAGTTATGGTTCTCAAGACAGTTTCGATAAGAAAAATGTGTTAATTGAAGATGCTTCAATATACCCAATACCCAACACTAGTTTTTGTAAGCTAACTAACTCTACAGTACCTGAAAATCCTGAACAACCTGTCAAAGAagagataaatttaaattttgatgatGATGTAAGCTTTCCAGATCATTATGATGATGGAGCGCAGTGTGACACAATAGCTGTAGAATTTAAAGAGGAAGAACCCATAAAAACTGaaggaaaaaaatacacatGTTACTGTGGACTTACATTTACTACAAAAGAGCAGTATAAAAGCcatttaaaacaacaaaactgtAATAAGTacaaaaaggtattagaaaaagttaacaaaaacaaattagttAGTATTACAAATGAGATAGAATGTGTTGAATGTAAACGCAAGTTCAAAACTCCGGATGCATGGAGGGTACATCAACAAGTCCACCGTAATGAGCACTTGTCAGATAATAAATCATTAGGACATGTTTGCAAATTCTGTTTATGCCAGTTCAAAACGGAAGCAGCGTTAAAAACTCACATACTAAAGCATGAGAAAACGATAAACAGCAAAATAGAATCCTACCAATGCTCATTCTGTTTACGTAAATTTAAGAACAAAACCTCTTTATCAGCTCACATATTACGTCATGAAGAAACAGACAACATAAAACACGTCTGCAAAGTTTGTAAAAGAGAATTTAAGTACAAAGCTTATTTAAAAAACCATATCTTAACGATGCATTCAAGAAAAAATGGCACAAGTTGCGAAGTTTGCGCACAAAGTTTTCCTAATAAAGAGAGTTTAGAATTGCATAAAGATAGTCATAAGAATGAGAAGAATCATCGTTGTAATATTTGCAATAAAGCGTTCCTTATGTTGTGTACGTTGAAGGAGCATATGCGGACTCATACTGGTGAAAAGCCATTCCTTTGCTCACAGTGCGGTCGAGGGTTTAGTCAGAAGACTAATTTAGCGCAGCATATGAGAAGACATCAGGGATTGAAGCCTTTTAAGtgtgaaaattgtgaaaaaagATTTGTATCAAAAGGCGAACTAGACGCGCACAACCGAAAACACAGCGGAGCACACCCCTTCGTTTGCGATGACTGCGGCAACGGCTTCACAACCTCAAGCGCTCTAGTCAAACACCGTCGCATACACACTGGAGAAAAACCTTACCTTTGTGACCTCTGCCCAATGAGGTTCGCTGCATCCGGCACTTTAACGAACCATCGAAGAACGCATACTGGTGAACGTCCCTTCCAGTGTTCTTATTGTGAAAAAGCCTTCGTACAACGCAATGATTTGATCTCCCATATCCGTTGTCATACCGGCGAAAAGCCATACATTTGTACTCAGTGTGGTCAGTCGTTCAGAAAAGCTTCCGGGTTGAAGAGCCATGTTAAGATGCATGTGAAGGAACCGGGGAATCTGCTTCAAGGTGTTAGTGTGATGGTGAGTGGAATGCAATGTGCGGAACAGTGA
- Protein Sequence
- MEISVQTFDRICRVCLVECTDMKSLFAKMDGEKRNLFEILAFTADIKVKFEDTLPKQVCGECESVMCKADAFKRRCQNSETILNYVYQNSVNRGETSKNDKKCSIKDENGDLTEKLTNHITFETSNVTSYGSQDSFDKKNVLIEDASIYPIPNTSFCKLTNSTVPENPEQPVKEEINLNFDDDVSFPDHYDDGAQCDTIAVEFKEEEPIKTEGKKYTCYCGLTFTTKEQYKSHLKQQNCNKYKKVLEKVNKNKLVSITNEIECVECKRKFKTPDAWRVHQQVHRNEHLSDNKSLGHVCKFCLCQFKTEAALKTHILKHEKTINSKIESYQCSFCLRKFKNKTSLSAHILRHEETDNIKHVCKVCKREFKYKAYLKNHILTMHSRKNGTSCEVCAQSFPNKESLELHKDSHKNEKNHRCNICNKAFLMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCEKRFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYLCDLCPMRFAASGTLTNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYICTQCGQSFRKASGLKSHVKMHVKEPGNLLQGVSVMVSGMQCAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041986;
- 90% Identity
- iTF_00039081;
- 80% Identity
- -